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MS005667 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005667
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCore-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Genome locationscaffold254:671606..671842
RNA-Seq ExpressionMS005667
SyntenyMS005667
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0016757 - transferase activity, transferring glycosyl groups (molecular function)
InterPro domainsIPR044174 - Glycosyltransferase BC10-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032923.1 hypothetical protein SDJN02_06974, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1958.89Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    FRGHG  +N YIHADPSV  N PGGVF+ RFIP  +T               A AVIDDPLNLYFALVSQRCIPI SFDF++N+
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

XP_022133542.1 uncharacterized protein LOC111006101 [Momordica charantia]9.7e-2570Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    FRGHG LFN YIHADPSV  NPPGGVFE RFI  GKT               ARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

XP_022961358.1 uncharacterized protein LOC111461937 [Cucurbita moschata]1.2e-1958.89Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    FRGHG  +N YIHADPSV  N PGGVF+ RFIP  +T               A AVIDDPLNLYFALVSQRCIPI SFDF++N+
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

XP_022990393.1 uncharacterized protein LOC111487264 [Cucurbita maxima]1.2e-1958.89Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    FRGHG  +N YIHADPSV  N PGGVF+ RFIP  +T               A AVIDDPLNLYFALVSQRCIPI SFDF++N+
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

XP_023523379.1 uncharacterized protein LOC111787593 [Cucurbita pepo subsp. pepo]1.2e-1958.89Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    FRGHG  +N YIHADPSV  N PGGVF+ RFIP  +T               A AVIDDPLNLYFALVSQRCIPI SFDF++N+
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

TrEMBL top hitse value%identityAlignment
A0A0A0K8K2 Uncharacterized protein2.5e-1854.44Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    F GH   +N YIHADP+V   PPGGVF+ RF+P  KT+              ARAVIDDPLNLYFALVSQ CIPI SFDF++++
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

A0A1S3C397 uncharacterized protein LOC1034965243.3e-1854.44Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    F GH   +N YIHADP+V   PPGGVF+ RF+P  KT               ARAVIDDPLNLYFALVSQ CIPI SFDF++++
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

A0A6J1BWZ7 uncharacterized protein LOC1110061014.7e-2570Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    FRGHG LFN YIHADPSV  NPPGGVFE RFI  GKT               ARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

A0A6J1HBZ3 uncharacterized protein LOC1114619375.9e-2058.89Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    FRGHG  +N YIHADPSV  N PGGVF+ RFIP  +T               A AVIDDPLNLYFALVSQRCIPI SFDF++N+
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

A0A6J1JT55 uncharacterized protein LOC1114872645.9e-2058.89Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+    FRGHG  +N YIHADPSV  N PGGVF+ RFIP  +T               A AVIDDPLNLYFALVSQRCIPI SFDF++N+
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52060.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein1.7e-1441.3Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNP--PGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+  S F+GH  L+N YIHADP+   +P        ++FIP  +T               A A++DDP NLYFAL+SQ CIP+ SF +I N+
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNP--PGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

AT3G52060.2 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein1.7e-1441.3Show/hide
Query:  PISSSLFRGHGSLFNAYIHADPSVGFNP--PGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY
        P+  S F+GH  L+N YIHADP+   +P        ++FIP  +T               A A++DDP NLYFAL+SQ CIP+ SF +I N+
Subjt:  PISSSLFRGHGSLFNAYIHADPSVGFNP--PGGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY

AT4G32290.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein4.2e-1039.74Show/hide
Query:  SLFNAYIHADPSVGFNPP-GGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIF
        +L+N Y+HADP+  ++PP  GVF +R I    ++              A A++DDPLN  FA++S  C+PI+SFDF +
Subjt:  SLFNAYIHADPSVGFNPP-GGVFESRFIPVGKTISD-----------YARAVIDDPLNLYFALVSQRCIPIQSFDFIF

AT5G22070.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein2.6e-1240.86Show/hide
Query:  PISSSLFRGHG-SLFNAYIHADPSVGFNPP--GGVFESRFIP------------VGKTISDYARAVIDDPLNLYFALVSQRCIPIQSFDFIFN
        PI    F GH  SL+N Y+HADP V    P  G VFE+ FI             +  T    A A +DDP N YFA++SQ CIP+ SF+++++
Subjt:  PISSSLFRGHG-SLFNAYIHADPSVGFNPP--GGVFESRFIP------------VGKTISDYARAVIDDPLNLYFALVSQRCIPIQSFDFIFN

AT5G25330.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein2.3e-0838.27Show/hide
Query:  HGSLFNAYIHADPSVGFNPPG-GVFESRFIPVGK-------TISDYAR-----AVIDDPLNLYFALVSQRCIPIQSFDFIF
        H SL+N Y+H DP+    P   G F++R IP  K       T+   AR     A+++DP N  F L+S  CIP+ SF+F +
Subjt:  HGSLFNAYIHADPSVGFNPPG-GVFESRFIPVGK-------TISDYAR-----AVIDDPLNLYFALVSQRCIPIQSFDFIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCGATCTCTTCTTCGCTCTTCCGCGGCCATGGATCGCTCTTCAATGCCTACATCCACGCCGATCCCTCTGTCGGATTCAACCCTCCCGGCGGTGTCTTCGAAAGCCGATT
CATTCCGGTGGGGAAGACCATCTCCGACTACGCGCGTGCCGTCATCGACGATCCTCTGAACCTCTACTTTGCCCTCGTCTCTCAACGCTGTATACCTATCCAATCCTTCG
ATTTCATCTTCAATTAC
mRNA sequenceShow/hide mRNA sequence
CCGATCTCTTCTTCGCTCTTCCGCGGCCATGGATCGCTCTTCAATGCCTACATCCACGCCGATCCCTCTGTCGGATTCAACCCTCCCGGCGGTGTCTTCGAAAGCCGATT
CATTCCGGTGGGGAAGACCATCTCCGACTACGCGCGTGCCGTCATCGACGATCCTCTGAACCTCTACTTTGCCCTCGTCTCTCAACGCTGTATACCTATCCAATCCTTCG
ATTTCATCTTCAATTAC
Protein sequenceShow/hide protein sequence
PISSSLFRGHGSLFNAYIHADPSVGFNPPGGVFESRFIPVGKTISDYARAVIDDPLNLYFALVSQRCIPIQSFDFIFNY