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MS005679 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005679
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L18-like
Genome locationscaffold254:737851..738228
RNA-Seq ExpressionMS005679
SyntenyMS005679
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147050.1 uncharacterized protein LOC111016081 [Momordica charantia]2.4e-6298.41Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGN+IAERCKEADVFVMSYE
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PPKSERIEGKIEIVIDTIKENGILFV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

XP_022937699.1 uncharacterized protein LOC111444022 [Cucurbita moschata]2.1e-5892.06Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFV+SY+
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PPKS +IEGKIEIVID IK+NGILFV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

XP_022974777.1 uncharacterized protein LOC111473501 [Cucurbita maxima]2.1e-5892.06Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFV+SY+
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PPKS +IEGKIEIVID IK+NGILFV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

XP_022974979.1 uncharacterized protein LOC111473828 [Cucurbita maxima]2.1e-5892.06Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFV+SY+
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PPKS +IEGKIEIVID IK+NGILFV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

XP_023540956.1 uncharacterized protein LOC111801186 [Cucurbita pepo subsp. pepo]2.1e-5892.06Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFV+SY+
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PPKS +IEGKIEIVID IK+NGILFV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

TrEMBL top hitse value%identityAlignment
A0A0A0L7S5 Uncharacterized protein1.3e-5689.68Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGEAAKR N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVF MSY+
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PP  ERI+ K+ IVIDTIKENGI+FV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

A0A6J1CZ23 uncharacterized protein LOC1110160811.2e-6298.41Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGN+IAERCKEADVFVMSYE
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PPKSERIEGKIEIVIDTIKENGILFV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

A0A6J1FBY3 uncharacterized protein LOC1114440221.0e-5892.06Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFV+SY+
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PPKS +IEGKIEIVID IK+NGILFV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

A0A6J1IB72 uncharacterized protein LOC1114735011.0e-5892.06Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFV+SY+
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PPKS +IEGKIEIVID IK+NGILFV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

A0A6J1IJ40 uncharacterized protein LOC1114738281.0e-5892.06Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGE +KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRIIGNLIAERCKEADVFV+SY+
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        PPKS +IEGKIEIVID IK+NGILFV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

SwissProt top hitse value%identityAlignment
A9BG02 50S ribosomal protein L181.3e-0525.62Show/hide
Query:  KRPNRKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKS
        K+ ++K+ +Q+  + +R  V        L V+ S++ I+A+++       +++AST  K L+  L    D+NA + +G LIAE+ KE  +  + ++    
Subjt:  KRPNRKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKS

Query:  ERIEGKIEIVIDTIKENGILF
         +  GK++ + +  +E G+ F
Subjt:  ERIEGKIEIVIDTIKENGILF

B1XSR7 50S ribosomal protein L182.2e-0534.41Show/hide
Query:  LDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILF
        L V  S   I A+V     +KVV+AAST  KDLR ++ + +   A + IG L+AER  +A V  ++++     R  G+I+ + +  +E G+ F
Subjt:  LDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGILF

B5ZYV1 50S ribosomal protein L182.6e-0635Show/hide
Query:  SRGEA-AKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSE
        SR EA A+R NR     ++    RP  L V+ S + I+A+V+     K ++AAST  KDLR SL +  D  A  ++G L+AER  +A V  + ++   + 
Subjt:  SRGEA-AKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSE

Query:  RIEGKIEIVIDTIKENGILF
           G+I+ + D  +E G+ F
Subjt:  RIEGKIEIVIDTIKENGILF

Q11HR8 50S ribosomal protein L182.9e-0530.83Show/hide
Query:  SRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSER
        S+    +R  R   K +     RP  L VY S + I+A+V+       ++AAS+  KDLR  L +  D +A  ++G LIAER K+A +  + ++  +   
Subjt:  SRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSER

Query:  I-EGKIEIVIDTIKENGILF
        I  G+++ + D  +E G+ F
Subjt:  I-EGKIEIVIDTIKENGILF

Q5P316 50S ribosomal protein L181.3e-0529.75Show/hide
Query:  RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKS
        RR+R   AK    KS +           L V+ +   I+A+V+  + S+V++AAST   D+R  LP+  +  A +++G LIAER K A V  ++++    
Subjt:  RRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKS

Query:  ERIEGKIEIVIDTIKENGILF
         +  G+++ + +  +E G+ F
Subjt:  ERIEGKIEIVIDTIKENGILF

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein4.1e-2346.9Show/hide
Query:  AKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIEGK
        +K P++  S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TNSKD++  L S  D  AC  IG +++ER KEADV+  SY P   ++ EGK
Subjt:  AKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIEGK

Query:  IEIVIDTIKENGI
        I  V+ ++ +NGI
Subjt:  IEIVIDTIKENGI

AT1G08845.2 Ribosomal L18p/L5e family protein4.1e-2346.9Show/hide
Query:  AKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIEGK
        +K P++  S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TNSKD++  L S  D  AC  IG +++ER KEADV+  SY P   ++ EGK
Subjt:  AKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIEGK

Query:  IEIVIDTIKENGI
        I  V+ ++ +NGI
Subjt:  IEIVIDTIKENGI

AT3G20230.1 Ribosomal L18p/L5e family protein7.9e-5175.4Show/hide
Query:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE
        AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPF+L+V+FSR+FIHAKVMHR TSKV+S A+TN++D+R ++PS  D+ ACR+IG LIAER  EADV+ +SYE
Subjt:  AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYE

Query:  PPKSERIEGKIEIVIDTIKENGILFV
        P K ERIEGK+ IVIDTIKE+GI+FV
Subjt:  PPKSERIEGKIEIVIDTIKENGILFV

AT3G22450.1 Ribosomal L18p/L5e family protein1.5e-1738.26Show/hide
Query:  EAAKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIE
        EA K+  R  ++ Q T  +  PF LD+Y S+  + A V+HR TSKVV+ A + SKD+++ L S  +  AC  +G ++A+R  E D+  + Y P K ++IE
Subjt:  EAAKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIE

Query:  GKIEIVIDTIKENGI
        GK+++V+  + +NG+
Subjt:  GKIEIVIDTIKENGI

AT5G27820.1 Ribosomal L18p/L5e family protein1.7e-1334.02Show/hide
Query:  YMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI
        Y++P+VL ++F+ +F+HA+V+H  T+ V  +AS+  K LR ++    D  A   IG ++ ER    D+  ++ +  K +R  GK++ VID+++E G+
Subjt:  YMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTACTT
TTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGCAACAAGCAAAGTGGTATCGGCAGCAAGCACCAATTCCAAGGATTTAAGGTATTCATTACCATCACCTACTG
ATGACAATGCATGCCGGATTATAGGGAACCTAATTGCAGAGAGATGTAAAGAAGCTGATGTATTTGTAATGTCTTATGAGCCTCCAAAGAGTGAAAGAATTGAAGGGAAA
ATTGAGATTGTCATTGACACCATTAAGGAGAATGGTATCCTATTCGTC
mRNA sequenceShow/hide mRNA sequence
GCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTACTT
TTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGCAACAAGCAAAGTGGTATCGGCAGCAAGCACCAATTCCAAGGATTTAAGGTATTCATTACCATCACCTACTG
ATGACAATGCATGCCGGATTATAGGGAACCTAATTGCAGAGAGATGTAAAGAAGCTGATGTATTTGTAATGTCTTATGAGCCTCCAAAGAGTGAAAGAATTGAAGGGAAA
ATTGAGATTGTCATTGACACCATTAAGGAGAATGGTATCCTATTCGTC
Protein sequenceShow/hide protein sequence
AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVMSYEPPKSERIEGK
IEIVIDTIKENGILFV