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MS005680 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005680
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L18-like
Genome locationscaffold254:739113..739307
RNA-Seq ExpressionMS005680
SyntenyMS005680
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049096.1 50S ribosomal protein L18-like [Cucumis melo var. makuwa]2.6e-0757.81Show/hide
Query:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL
        +LS +IPE SS        SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STHN   L+
Subjt:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL

XP_008438261.1 PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]2.6e-0757.81Show/hide
Query:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL
        +LS +IPE SS        SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STHN   L+
Subjt:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL

XP_022147050.1 uncharacterized protein LOC111016081 [Momordica charantia]9.8e-2396.67Show/hide
Query:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR
        MLSLTIPEP SSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTH+R
Subjt:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR

XP_022974979.1 uncharacterized protein LOC111473828 [Cucurbita maxima]5.8e-0764.41Show/hide
Query:  LSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR
        LS +IP   S SAS   PSA LL+GFIQKPTSLSWPSSF KL I+      PP STHNR
Subjt:  LSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR

XP_038905466.1 50S ribosomal protein L18-like [Benincasa hispida]3.2e-1373.44Show/hide
Query:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL
        MLS +IPE SSSSASA RP+A LL+GFIQKPTSLSWPSSF KL ISF AI AP  STH+R  L+
Subjt:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL

TrEMBL top hitse value%identityAlignment
A0A0A0L7S5 Uncharacterized protein1.1e-0657.63Show/hide
Query:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHN
        +LS +IPE SSS+A+       L++ F+ KPTS SW SSF KL ISFDAI AP  STHN
Subjt:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHN

A0A1S3AVM4 50S ribosomal protein L18-like1.3e-0757.81Show/hide
Query:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL
        +LS +IPE SS        SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STHN   L+
Subjt:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL

A0A5A7U4A4 50S ribosomal protein L18-like1.3e-0757.81Show/hide
Query:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL
        +LS +IPE SS        SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STHN   L+
Subjt:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL

A0A6J1CZ23 uncharacterized protein LOC1110160814.7e-2396.67Show/hide
Query:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR
        MLSLTIPEP SSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTH+R
Subjt:  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR

A0A6J1IJ40 uncharacterized protein LOC1114738282.8e-0764.41Show/hide
Query:  LSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR
        LS +IP   S SAS   PSA LL+GFIQKPTSLSWPSSF KL I+      PP STHNR
Subjt:  LSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAATGTTGAGCTTAACAATTCCCGAGCCATCGTCGTCGTCAGCTTCTGCTCTTCGACCCTCCGCCAGATTACTTACAGGTTTCATTCAGAAACCCACTTCTCTTTCATG
GCCGTCTTCTTTTCCCAAGCTCTGCATCTCCTTCGACGCCATTGCAGCACCTCCATTTTCCACGCACAATAGAGTACGCCTTCTC
mRNA sequenceShow/hide mRNA sequence
GAAATGTTGAGCTTAACAATTCCCGAGCCATCGTCGTCGTCAGCTTCTGCTCTTCGACCCTCCGCCAGATTACTTACAGGTTTCATTCAGAAACCCACTTCTCTTTCATG
GCCGTCTTCTTTTCCCAAGCTCTGCATCTCCTTCGACGCCATTGCAGCACCTCCATTTTCCACGCACAATAGAGTACGCCTTCTC
Protein sequenceShow/hide protein sequence
EMLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL