; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005708 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005708
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein Os04g0386900-like
Genome locationscaffold254:1003216..1004164
RNA-Seq ExpressionMS005708
SyntenyMS005708
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily
IPR044837 - B3 domain-containing protein REM16-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146910.1 B3 domain-containing protein Os04g0386900-like [Momordica charantia]1.5e-6684.35Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQSQEKPPSE   MEPR  EIFPLS+KPFHGVIL KSHVAP Y M+LPAKFHSVLPAIVIHGV+YCGGKEW VDYYGNRRG++LDTR WRKFV++NHLK 
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDACVFELMECSSS +KFRVQILRGDIPVQLHDKF GES+DTPI ID
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

XP_022147119.1 B3 domain-containing protein Os04g0386900-like [Momordica charantia]1.6e-81100Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

XP_022941967.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata]1.4e-6177.55Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQSQEKPP E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM LPAKFHSVLPAI+I  VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK 
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDACVFEL+ECSSS +KFRVQILRGDIP +LH+KFSGES++TPI ID
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

XP_022974195.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima]4.9e-6278.23Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQSQEKPP+E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM LPAKFHSVLPAI+I  VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK 
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDACVFEL+ECSSS LKFRVQILRGDIP +LH+KFSGES++TPI ID
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

XP_023539026.1 B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]1.4e-6176.87Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQSQEKPP+E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM +PAKFHSVLPAI+I  VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK 
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDACVFEL+ECSSS +KFRVQILRGDIP +LH+KFSGES++TPI ID
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

TrEMBL top hitse value%identityAlignment
A0A0A0L3V3 TF-B3 domain-containing protein3.0e-5772.79Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQS  KPP+E  TMEP+N E  PLS KP+H  IL+KSHVAPIYN+ LPAKFHS+LPAIVI  VL C GK+W +DY+GNRRGK+LD++ WRKFVNDN LKS
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDA VFEL+ECSSS LKFRVQIL GDIP++LHDKFSGE+K+TPI +D
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

A0A6J1CYN6 B3 domain-containing protein Os04g0386900-like7.1e-6784.35Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQSQEKPPSE   MEPR  EIFPLS+KPFHGVIL KSHVAP Y M+LPAKFHSVLPAIVIHGV+YCGGKEW VDYYGNRRG++LDTR WRKFV++NHLK 
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDACVFELMECSSS +KFRVQILRGDIPVQLHDKF GES+DTPI ID
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

A0A6J1D033 B3 domain-containing protein Os04g0386900-like7.8e-82100Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

A0A6J1FTK2 B3 domain-containing protein Os04g0386900-like6.9e-6277.55Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQSQEKPP E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM LPAKFHSVLPAI+I  VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK 
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDACVFEL+ECSSS +KFRVQILRGDIP +LH+KFSGES++TPI ID
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

A0A6J1IDC2 B3 domain-containing protein Os04g0386900-like2.4e-6278.23Show/hide
Query:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        MQSQEKPP+E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM LPAKFHSVLPAI+I  VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK 
Subjt:  MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        GDACVFEL+ECSSS LKFRVQILRGDIP +LH+KFSGES++TPI ID
Subjt:  GDACVFELMECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

SwissProt top hitse value%identityAlignment
Q6AV21 B3 domain-containing protein Os03g06198009.7e-0534.38Show/hide
Query:  FHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRR---GKS-LDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRV
        F G+ L+  + A      LP K H  L       VL C G  W ++    RR   GK    T  WRKF +DN L+ GD C+FEL +    T++  +
Subjt:  FHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRR---GKS-LDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRV

Q7XLP4 B3 domain-containing protein Os04g03869001.0e-1734.27Show/hide
Query:  PSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFE
        P E    +   + + PL  KP+   I+ KSHV P + + +P  F  +LP+      L   G+ W + + G R  + L+   WR F  DN L+ GD CVFE
Subjt:  PSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFE

Query:  LM---ECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID
        L+         ++FRVQ+LR +IP ++  +  G +  TPI ID
Subjt:  LM---ECSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID

Q8RYD1 B3 domain-containing protein REM163.3e-0531.31Show/hide
Query:  VILAKSHVAPIYNMTLPAKFHSVLPAIVIHG--VLYCGGKEWTVDY--YGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRVQILRGD
        V + +SHV     +T+P K+  V   ++     V+     +W + +  +G R    + T  W+KFV DN+L+ GD CVFE     +  L   V I RG+
Subjt:  VILAKSHVAPIYNMTLPAKFHSVLPAIVIHG--VLYCGGKEWTVDY--YGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRVQILRGD

Q9LHY9 B3 domain-containing protein Os06g01123001.4e-1640.98Show/hide
Query:  PFHGVILAKSHVAPIYNMTLPAKFHSVL--PAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMEC-SSSTLKFRVQILR
        PF   ++AKSH+ P + M +P +F   L  P      VL+ GGK W   Y G+ + K LD   W +F  DN L  GDACVFEL+   ++  L+F+VQILR
Subjt:  PFHGVILAKSHVAPIYNMTLPAKFHSVL--PAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMEC-SSSTLKFRVQILR

Query:  GDIPVQLHDKFSGESKDTPIKI
        G +P ++     G + D PI I
Subjt:  GDIPVQLHDKFSGESKDTPIKI

Arabidopsis top hitse value%identityAlignment
AT1G49480.1 related to vernalization1 18.4e-0428.46Show/hide
Query:  QSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKF-HSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS
        + +E+  +   T EP N         P+  V+L  S++     M LP+ F    L  I     L  G K+W V     + G++  ++ W +F  +N++  
Subjt:  QSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKF-HSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKS

Query:  GDACVFELMECSSSTLK---FRV
        GD CVFEL+      L+   FRV
Subjt:  GDACVFELMECSSSTLK---FRV

AT4G33280.1 AP2/B3-like transcriptional factor family protein2.4e-0631.31Show/hide
Query:  VILAKSHVAPIYNMTLPAKFHSVLPAIVIHG--VLYCGGKEWTVDY--YGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRVQILRGD
        V + +SHV     +T+P K+  V   ++     V+     +W + +  +G R    + T  W+KFV DN+L+ GD CVFE     +  L   V I RG+
Subjt:  VILAKSHVAPIYNMTLPAKFHSVLPAIVIHG--VLYCGGKEWTVDY--YGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRVQILRGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCACAAGAGAAACCTCCGTCAGAGCATACAACAATGGAGCCGCGAAATTATGAAATTTTTCCACTCTCAGATAAACCGTTCCATGGTGTTATTCTTGCAAAATC
GCATGTCGCTCCCATTTATAATATGACTTTGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTGTGATCCATGGGGTTCTTTACTGTGGGGGCAAGGAATGGACAGTAG
ATTACTATGGAAACCGACGCGGTAAGTCACTTGATACGAGACATTGGAGGAAGTTTGTGAATGATAATCATCTAAAGTCTGGAGATGCTTGTGTATTTGAGCTCATGGAA
TGTAGCAGCAGCACACTCAAATTCAGAGTTCAAATTCTCAGAGGTGACATCCCTGTCCAGCTGCACGACAAGTTCAGCGGGGAGAGTAAAGACACCCCTATAAAAATTGA
C
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCACAAGAGAAACCTCCGTCAGAGCATACAACAATGGAGCCGCGAAATTATGAAATTTTTCCACTCTCAGATAAACCGTTCCATGGTGTTATTCTTGCAAAATC
GCATGTCGCTCCCATTTATAATATGACTTTGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTGTGATCCATGGGGTTCTTTACTGTGGGGGCAAGGAATGGACAGTAG
ATTACTATGGAAACCGACGCGGTAAGTCACTTGATACGAGACATTGGAGGAAGTTTGTGAATGATAATCATCTAAAGTCTGGAGATGCTTGTGTATTTGAGCTCATGGAA
TGTAGCAGCAGCACACTCAAATTCAGAGTTCAAATTCTCAGAGGTGACATCCCTGTCCAGCTGCACGACAAGTTCAGCGGGGAGAGTAAAGACACCCCTATAAAAATTGA
C
Protein sequenceShow/hide protein sequence
MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVIHGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELME
CSSSTLKFRVQILRGDIPVQLHDKFSGESKDTPIKID