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MS005714 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005714
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSWIB domain-containing protein
Genome locationscaffold254:1032323..1033776
RNA-Seq ExpressionMS005714
SyntenyMS005714
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582547.1 hypothetical protein SDJN03_22549, partial [Cucurbita argyrosperma subsp. sororia]1.2e-5882.47Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA
        MSSG SNGIRVFRGCR+LLAP KSSA+VP   A KSK   K  +E KEKT   SD AAAAAPKPK +REMTRP G+LKV QVSPALGNFLGV EASRTDA
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKLHNLQNP+NKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_022146901.1 upstream activation factor subunit spp27-like [Momordica charantia]9.0e-75100Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA
        MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Subjt:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_022924718.1 upstream activation factor subunit spp27-like [Cucurbita moschata]6.9e-5982.47Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA
        MSSG SNGIRVFRGC +LLAP KSSA+VP   A KSK   K  +E KEKT P SD AAAAAPKPK +REMTRP G+LKV QVSPALGNFLGV EASRTDA
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKLHNLQNP+NKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_022980440.1 protein TRI1-like [Cucurbita maxima]1.5e-6185.71Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA
        MSSG SNGIRVFRGCRALLAPSKSSA+VP  AA KS+ T K  +E KEKT P SD AAAAAPKPK+KREMTR  G LKV QVSPALGNFLGV EASRTDA
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_038877222.1 upstream activation factor subunit UAF30 [Benincasa hispida]3.1e-5984.52Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTA-AAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTD
        MSSG SNGIRVFR CRALLAPSKSSA+V AA AAKS  T KPK +SK KT P+SDTA  +A PKPKIKRE+TRP GILKV QVSPAL NFLGV EASR D
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTA-AAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTD

Query:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLA HFVKN
Subjt:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

TrEMBL top hitse value%identityAlignment
A0A0A0L3V0 SWIB domain-containing protein3.6e-5379.11Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGK--PKSE-SKEKTAPSSDTA-AAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEAS
        MSSG +NGIRVFR CRALLAPSKSSA+VP A A KSK T K  PK +  K KT PSS  A  AA P+PKIK+EM+RP+GILKV QVSPAL NFLGV EAS
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGK--PKSE-SKEKTAPSSDTA-AAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEAS

Query:  RTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        R+DAV QIWSYIKLHNLQNP NKREIYCDDKLKAIFEGREKVGFLEIGK LARHFVKN
Subjt:  RTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A1S3AVG6 upstream activation factor subunit UAF30-like4.7e-5377.71Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSE-SKEKTAPSSDTAA--AAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASR
        MSSG +NG+RVFR CR LLAPSKSSA+VP A A KSK T KPK++  K KT PSS  AA  AA P+PKIK+  +RP+GILKV QVSPAL NFLGV EASR
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSE-SKEKTAPSSDTAA--AAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASR

Query:  TDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        TDAV QIWSYIKLHNLQNP NKREIYCDDKLKAIFEGREKV FLEIGK+LARHFVKN
Subjt:  TDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1D0R8 upstream activation factor subunit spp27-like4.3e-75100Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA
        MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Subjt:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1EDA2 upstream activation factor subunit spp27-like3.3e-5982.47Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA
        MSSG SNGIRVFRGC +LLAP KSSA+VP   A KSK   K  +E KEKT P SD AAAAAPKPK +REMTRP G+LKV QVSPALGNFLGV EASRTDA
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKLHNLQNP+NKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1IWB1 protein TRI1-like7.2e-6285.71Show/hide
Query:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA
        MSSG SNGIRVFRGCRALLAPSKSSA+VP  AA KS+ T K  +E KEKT P SD AAAAAPKPK+KREMTR  G LKV QVSPALGNFLGV EASRTDA
Subjt:  MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  VKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp278.9e-0937.82Show/hide
Query:  APSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAA---AAPKPKIKREMTRPAG--ILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQ
        APS+  +    A A K+K     ++ ++E   P+  T           K KR    PA   + K  ++SP L  FLG+ + SR   VK++W YIK H+LQ
Subjt:  APSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAA---AAPKPKIKREMTRPAG--ILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQ

Query:  NPANKREIYCDDKLKAIFE
        +P +KR I CDDKLK++FE
Subjt:  NPANKREIYCDDKLKAIFE

Q05024 Protein TRI13.0e-0935.25Show/hide
Query:  PAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKL
        P  +  K K   + KS+ K+K   S D+ + +  K                  +S  L  FLG  E  RT  VK IW YIK H+LQNP ++REI CD+K+
Subjt:  PAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKL

Query:  KAIFEGREKVGFLEIGKLLARH
        + IF   +K+    + KLL +H
Subjt:  KAIFEGREKVGFLEIGKLLARH

Q08747 Upstream activation factor subunit UAF302.8e-1033.33Show/hide
Query:  KATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGRE
        +++G+ K++S+ K           +  P   R++T          +S +L + LG  E +RT+ V+++W+YIK HNLQNP NK+EI CD+KL+ I    +
Subjt:  KATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGRE

Query:  KVGFLEIGKLLARHFVK
             E+ K+LA H  +
Subjt:  KVGFLEIGKLLARHFVK

Q2TBN1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 12.7e-0534.33Show/hide
Query:  QVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLL
        ++ P L   LG+   +R   ++ +W YIK H LQ+P  +  + CD  L+ IFE  +++ F EI + L
Subjt:  QVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLL

Q9P7S3 SWI/SNF and RSC complexes subunit ssr31.3e-0740.58Show/hide
Query:  QVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLAR
        ++S A  N LG+ E +R D V  +W YIK H LQ+   KR I CD  L+ +FE  +++ F  I +L+ R
Subjt:  QVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLAR

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein8.5e-2358.75Show/hide
Query:  GILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        GI K   VS  L +F G  E +R  A+K++W Y+KLHNLQNPANK+EI+CDDKLK IF+G++KVG  EI KLL+ HF K+
Subjt:  GILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

AT2G14880.1 SWIB/MDM2 domain superfamily protein1.1e-2251.55Show/hide
Query:  TAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFV
        T+A  + +P    +   P GI+K   VSP + + + +PE +RT A+K+IW+YIK H+LQ+P NKREI CD+KLK IFEGR++VGFLEI KL+  HF+
Subjt:  TAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein4.1e-2559.79Show/hide
Query:  AAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        AA++   K  R+ T   GILKV  VS  L NF+G  E SRT AVK+IW YIKL+NLQNP NKREI CD++LK IF G++ VGFLEI KLL++HF K+
Subjt:  AAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

AT3G03590.1 SWIB/MDM2 domain superfamily protein4.1e-3353.85Show/hide
Query:  VFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKL
        VFRG R+LLAP+  + S   +A +  K   KPK+++K K    SD+ A   P         R  GI KV  VSP L  FLG  E SRTDA+K IW+YIK 
Subjt:  VFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKL

Query:  HNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVK
        H+LQNPA+KREI+CD+ LK IFEG++KVGFLEI KLL+ HFVK
Subjt:  HNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVK

AT4G34290.1 SWIB/MDM2 domain superfamily protein1.4e-2244.36Show/hide
Query:  APSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANK
        AP +SS   P++          P   +  +   +  +AAAA+  P    +   P GI+K   VS A+ + +GVPE  RT A+K+IW+YIK H+LQ+P NK
Subjt:  APSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANK

Query:  REIYCDDKLKAIFEGREKVGFLEIGKLLARHFV
        R+I CD+KLK IFEG+E+VGFLEI KL+  HF+
Subjt:  REIYCDDKLKAIFEGREKVGFLEIGKLLARHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCCGGATTGAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCCCTCTTAGCTCCGTCGAAATCCTCAGCTTCCGTTCCCGCCGCCGCCGCCGCCAAATCGAA
GGCGACAGGGAAACCGAAGTCGGAGTCGAAGGAGAAGACTGCACCGAGCTCCGATACTGCCGCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGGCCGG
CGGGGATTCTGAAGGTCGCCCAGGTTTCTCCGGCGTTGGGCAACTTCTTGGGCGTACCGGAGGCATCTCGCACCGATGCCGTCAAGCAGATCTGGTCCTACATCAAGCTC
CATAACCTTCAGAACCCTGCTAACAAGAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGAGAAAAGGTTGGTTTCTTGGAGATCGGAAAATTGCT
CGCTCGCCATTTTGTGAAGAAC
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCCGGATTGAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCCCTCTTAGCTCCGTCGAAATCCTCAGCTTCCGTTCCCGCCGCCGCCGCCGCCAAATCGAA
GGCGACAGGGAAACCGAAGTCGGAGTCGAAGGAGAAGACTGCACCGAGCTCCGATACTGCCGCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGGCCGG
CGGGGATTCTGAAGGTCGCCCAGGTTTCTCCGGCGTTGGGCAACTTCTTGGGCGTACCGGAGGCATCTCGCACCGATGCCGTCAAGCAGATCTGGTCCTACATCAAGCTC
CATAACCTTCAGAACCCTGCTAACAAGAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGAGAAAAGGTTGGTTTCTTGGAGATCGGAAAATTGCT
CGCTCGCCATTTTGTGAAGAAC
Protein sequenceShow/hide protein sequence
MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKL
HNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN