; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005716 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005716
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein Os04g0386900-like
Genome locationscaffold254:1046370..1047412
RNA-Seq ExpressionMS005716
SyntenyMS005716
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily
IPR044837 - B3 domain-containing protein REM16-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146910.1 B3 domain-containing protein Os04g0386900-like [Momordica charantia]6.8e-8099.32Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDEN LKY
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

XP_022147119.1 B3 domain-containing protein Os04g0386900-like [Momordica charantia]2.8e-6583.67Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQSQEKPPSE   MEPR  EIFPLS+KPFHGVIL KSHVAP Y M+LPAKFHSVLPAIVIHGV+YCGGKEW VDYYGNRRG++LDTR WRKFV++N LK 
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDACVFELMECSSS +KFRVQILRGDIPVQLHDKF GES+DTPI ID
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

XP_022941967.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata]4.7e-5772.79Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQSQEKPP EP EM+P+   I PLS KP+HGVIL KSHVAP   M LPAKFHSVLPAI+I  V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++N LK 
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDACVFEL+ECSSS++KFRVQILRGDIP +LH+KF GESR+TPI ID
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

XP_022974195.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima]4.7e-5772.79Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQSQEKPP+EP EM+P+   I PLS KP+HGVIL KSHVAP   M LPAKFHSVLPAI+I  V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++N LK 
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDACVFEL+ECSSS++KFRVQILRGDIP +LH+KF GESR+TPI ID
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

XP_023539026.1 B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]4.7e-5772.11Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQSQEKPP+EP EM+P+   I PLS KP+HGVIL KSHVAP   M +PAKFHSVLPAI+I  V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++N LK 
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDACVFEL+ECSSS++KFRVQILRGDIP +LH+KF GESR+TPI ID
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

TrEMBL top hitse value%identityAlignment
A0A0A0L3V3 TF-B3 domain-containing protein2.7e-5064.63Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQS  KPP+E   MEP+  E  PLS KP+H  IL KSHVAP Y + LPAKFHS+LPAIVI  V+ C GK+W++DY+GNRRG+ LD++ WRKFV++N LK 
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDA VFEL+ECSSS++KFRVQIL GDIP++LHDKF GE+++TPI++D
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

A0A6J1CYN6 B3 domain-containing protein Os04g0386900-like3.3e-8099.32Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDEN LKY
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

A0A6J1D033 B3 domain-containing protein Os04g0386900-like1.3e-6583.67Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQSQEKPPSE   MEPR  EIFPLS+KPFHGVIL KSHVAP Y M+LPAKFHSVLPAIVIHGV+YCGGKEW VDYYGNRRG++LDTR WRKFV++N LK 
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDACVFELMECSSS +KFRVQILRGDIPVQLHDKF GES+DTPI ID
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

A0A6J1FTK2 B3 domain-containing protein Os04g0386900-like2.3e-5772.79Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQSQEKPP EP EM+P+   I PLS KP+HGVIL KSHVAP   M LPAKFHSVLPAI+I  V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++N LK 
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDACVFEL+ECSSS++KFRVQILRGDIP +LH+KF GESR+TPI ID
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

A0A6J1IDC2 B3 domain-containing protein Os04g0386900-like2.3e-5772.79Show/hide
Query:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY
        MQSQEKPP+EP EM+P+   I PLS KP+HGVIL KSHVAP   M LPAKFHSVLPAI+I  V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++N LK 
Subjt:  MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKY

Query:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        GDACVFEL+ECSSS++KFRVQILRGDIP +LH+KF GESR+TPI ID
Subjt:  GDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

SwissProt top hitse value%identityAlignment
Q2QMT5 B3 domain-containing protein LOC_Os12g400901.3e-0431Show/hide
Query:  DEIFPL----SNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYC---GGKEWRVDYYG-NRRGRTLDTRGWRKFVDENRLKYGDACVFELME
        DEIF L       P   V+L  +HV    ++ +P +F +       H ++       ++W V YY  +   R  +   W KF+ ENRL+ G+ C+FELM+
Subjt:  DEIFPL----SNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYC---GGKEWRVDYYG-NRRGRTLDTRGWRKFVDENRLKYGDACVFELME

Q6AV21 B3 domain-containing protein Os03g06198005.7e-0539.29Show/hide
Query:  FHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRR----GRTLDTRGWRKFVDENRLKYGDACVFEL
        F G+ L  S  A +Y   LP K H  L       V+ C G  W+++    RR     R   T GWRKF  +NRL+ GD C+FEL
Subjt:  FHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRR----GRTLDTRGWRKFVDENRLKYGDACVFEL

Q7XLP4 B3 domain-containing protein Os04g03869001.7e-1735.57Show/hide
Query:  EKPPSEPAEMEPR---IDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYG
        E  P  P E EP       + PL  KP+   I+ KSHV P + + +P  F  +LP+      +   G+ W + + G R  + L+  GWR F  +N L+ G
Subjt:  EKPPSEPAEMEPR---IDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYG

Query:  DACVFELM---ECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID
        D CVFEL+         V+FRVQ+LR +IP ++  +  G +  TPI ID
Subjt:  DACVFELM---ECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

Q8RYD1 B3 domain-containing protein REM167.4e-0530.61Show/hide
Query:  VILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGK---EWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMECSSSMVKFRVQILRGD
        V + +SHV     +++P K+      I    VV    +   E + + +G R    + T GW+KFV +N L+ GD CVFE     +  +   V I RG+
Subjt:  VILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGK---EWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMECSSSMVKFRVQILRGD

Q9LHY9 B3 domain-containing protein Os06g01123007.2e-1637.6Show/hide
Query:  SNKPFHGVILGKSHVAPAYLMSLPAKFHSVL--PAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMEC-SSSMVKFRVQ
        +  PF   ++ KSH+ P + M +P +F   L  P      V++ GGK W   Y G+ + + LD  GW +F  +NRL  GDACVFEL+   ++  ++F+VQ
Subjt:  SNKPFHGVILGKSHVAPAYLMSLPAKFHSVL--PAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMEC-SSSMVKFRVQ

Query:  ILRGDIPVQLHDKFRGESRDTPINI
        ILRG +P ++    +G + D PI I
Subjt:  ILRGDIPVQLHDKFRGESRDTPINI

Arabidopsis top hitse value%identityAlignment
AT1G49480.1 related to vernalization1 11.3e-0433.73Show/hide
Query:  PFHGVILGKSHVAPAYLMSLPAKF-HSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELM
        P+  V+L  S++    +M LP+ F    L  I     +  G K+W V     + GR   ++GW +F  EN +  GD CVFEL+
Subjt:  PFHGVILGKSHVAPAYLMSLPAKF-HSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELM

AT3G18990.1 AP2/B3-like transcriptional factor family protein2.0e-0535.05Show/hide
Query:  PFHGVILGKSHVAPAYLMSLPAKF-HSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMECSSSMVK---FRV
        PF  V+L  S++    +M LP+ F    L  I     V    K+W V     + GR   ++GW +F  EN L  GD CVFEL+     ++K   FRV
Subjt:  PFHGVILGKSHVAPAYLMSLPAKF-HSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMECSSSMVK---FRV

AT4G31680.1 Transcriptional factor B3 family protein6.4e-0432.65Show/hide
Query:  GKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMECSSSMV
        GK W  +      G+     GW+    EN+LK GD+C F+L++ + + V
Subjt:  GKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMECSSSMV

AT4G33280.1 AP2/B3-like transcriptional factor family protein5.3e-0630.61Show/hide
Query:  VILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGK---EWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMECSSSMVKFRVQILRGD
        V + +SHV     +++P K+      I    VV    +   E + + +G R    + T GW+KFV +N L+ GD CVFE     +  +   V I RG+
Subjt:  VILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGK---EWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELMECSSSMVKFRVQILRGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCACAAGAGAAACCTCCGTCAGAGCCTGCAGAAATGGAGCCGCGAATCGATGAAATTTTTCCACTCTCAAACAAACCGTTCCATGGTGTTATTCTTGGAAAATC
GCATGTTGCTCCTGCATATCTCATGAGCTTGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTGTGATCCATGGGGTTGTTTACTGTGGGGGCAAGGAATGGAGGGTAG
ATTACTATGGAAACCGACGCGGTAGGACGCTCGATACCAGAGGCTGGAGGAAGTTTGTTGATGAAAATCGTCTCAAATATGGAGATGCTTGTGTATTTGAGCTCATGGAA
TGTAGCAGCAGCATGGTCAAATTCAGAGTTCAAATTCTCAGAGGTGACATTCCTGTACAACTGCACGACAAGTTCAGGGGGGAGAGTAGAGACACTCCTATAAATATTGA
C
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCACAAGAGAAACCTCCGTCAGAGCCTGCAGAAATGGAGCCGCGAATCGATGAAATTTTTCCACTCTCAAACAAACCGTTCCATGGTGTTATTCTTGGAAAATC
GCATGTTGCTCCTGCATATCTCATGAGCTTGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTGTGATCCATGGGGTTGTTTACTGTGGGGGCAAGGAATGGAGGGTAG
ATTACTATGGAAACCGACGCGGTAGGACGCTCGATACCAGAGGCTGGAGGAAGTTTGTTGATGAAAATCGTCTCAAATATGGAGATGCTTGTGTATTTGAGCTCATGGAA
TGTAGCAGCAGCATGGTCAAATTCAGAGTTCAAATTCTCAGAGGTGACATTCCTGTACAACTGCACGACAAGTTCAGGGGGGAGAGTAGAGACACTCCTATAAATATTGA
C
Protein sequenceShow/hide protein sequence
MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENRLKYGDACVFELME
CSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID