; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005759 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005759
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhistone deacetylase complex subunit SAP18
Genome locationscaffold254:1398024..1400375
RNA-Seq ExpressionMS005759
SyntenyMS005759
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR010516 - Sin3 associated polypeptide p18
IPR042534 - Sin3 associated polypeptide p18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147400.1 histone deacetylase complex subunit SAP18 [Momordica charantia]1.2e-7399.28Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

XP_022943948.1 histone deacetylase complex subunit SAP18-like [Cucurbita moschata]1.2e-7094.96Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVVREVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

XP_022974173.1 histone deacetylase complex subunit SAP18-like [Cucurbita maxima]1.2e-7094.96Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVVREVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

XP_023538738.1 histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo]1.2e-7094.96Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVVREVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

XP_038879427.1 histone deacetylase complex subunit SAP18 [Benincasa hispida]3.9e-6994.24Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PR  H PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGNGRLDDSLALAELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

TrEMBL top hitse value%identityAlignment
A0A1S3AVL4 histone deacetylase complex subunit SAP182.5e-6993.53Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPR  H PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGN RLDDSLAL ELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

A0A5D3D2K7 Histone deacetylase complex subunit SAP182.5e-6993.53Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPR  H PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFV+REVGKTFSFGN RLDDSLAL ELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

A0A6J1D024 histone deacetylase complex subunit SAP185.7e-7499.28Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

A0A6J1FXI8 histone deacetylase complex subunit SAP18-like5.8e-7194.96Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVVREVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

A0A6J1IFF7 histone deacetylase complex subunit SAP18-like5.8e-7194.96Show/hide
Query:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV
        LVYPDRHGRFVVREVGKTFSFGNGR DD+LALAELGFQ+
Subjt:  LVYPDRHGRFVVREVGKTFSFGNGRLDDSLALAELGFQV

SwissProt top hitse value%identityAlignment
O00422 Histone deacetylase complex subunit SAP182.1e-2552.21Show/hide
Query:  EPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRL
        +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + V+E+G T S G    
Subjt:  EPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRL

Query:  DDSLALAELGFQV
        DDS+ L    FQ+
Subjt:  DDSLALAELGFQV

O55128 Histone deacetylase complex subunit SAP182.7e-2552.21Show/hide
Query:  EPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRL
        +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + V+E+G T S G    
Subjt:  EPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRL

Query:  DDSLALAELGFQV
        DDS+ L    FQ+
Subjt:  DDSLALAELGFQV

O64644 Histone deacetylase complex subunit SAP189.1e-4566.9Show/hide
Query:  AEAPRRAYGA-----PPRGPH-VPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  G      PPRG +  PPRP+ EPVDREKTCPLLLRVFTK GGHH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGA-----PPRGPH-VPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVVREVGKTFSFGNGRL-DDSLALAELGFQV
        FA VYP+  G + VREVG+T ++ N +  DDS  L+EL F++
Subjt:  FALVYPDRHGRFVVREVGKTFSFGNGRL-DDSLALAELGFQV

Q3T022 Histone deacetylase complex subunit SAP182.1e-2552.21Show/hide
Query:  EPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRL
        +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + V+E+G T S G    
Subjt:  EPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRL

Query:  DDSLALAELGFQV
        DDS+ L    FQ+
Subjt:  DDSLALAELGFQV

Q5RDT5 Histone deacetylase complex subunit SAP182.1e-2552.21Show/hide
Query:  EPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRL
        +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + V+E+G T S G    
Subjt:  EPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRL

Query:  DDSLALAELGFQV
        DDS+ L    FQ+
Subjt:  DDSLALAELGFQV

Arabidopsis top hitse value%identityAlignment
AT2G45640.1 SIN3 associated polypeptide P186.4e-4666.9Show/hide
Query:  AEAPRRAYGA-----PPRGPH-VPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  G      PPRG +  PPRP+ EPVDREKTCPLLLRVFTK GGHH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGA-----PPRGPH-VPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVVREVGKTFSFGNGRL-DDSLALAELGFQV
        FA VYP+  G + VREVG+T ++ N +  DDS  L+EL F++
Subjt:  FALVYPDRHGRFVVREVGKTFSFGNGRL-DDSLALAELGFQV

AT2G45640.2 SIN3 associated polypeptide P186.7e-4364.79Show/hide
Query:  AEAPRRAYGA-----PPRGPH-VPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  G      PPRG +  PPRP+ EPVDREKTCPLLLRVFTK GGHH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGA-----PPRGPH-VPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVVREVGKTFSFGNGRL-DDSLALAELGFQV
        FA VYP+  G +    VG+T ++ N +  DDS  L+EL F++
Subjt:  FALVYPDRHGRFVVREVGKTFSFGNGRL-DDSLALAELGFQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGAGAAGCAGAAGCACCAAGGAGAGCTTATGGCGCTCCTCCGAGAGGCCCTCATGTTCCTCCTCGTCCTCGCTTGGAACCCGTTGATCGCGAAAAGACTTGTCC
TTTGCTGCTTCGTGTTTTTACGAAGGTTGGGGGTCATCATTTCAATGAAGACTTCGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTTCAAATTTATACCTGGAAAGATG
CTACTCTTCGTGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCCAAACTATCTTTTGCTTTGGTGTATCCCGACAGACATGGCCGGTTT
GTAGTGAGAGAGGTTGGGAAGACATTCTCATTTGGAAATGGACGATTAGACGATAGCTTGGCCTTGGCTGAACTCGGTTTTCAGGTA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGAGAAGCAGAAGCACCAAGGAGAGCTTATGGCGCTCCTCCGAGAGGCCCTCATGTTCCTCCTCGTCCTCGCTTGGAACCCGTTGATCGCGAAAAGACTTGTCC
TTTGCTGCTTCGTGTTTTTACGAAGGTTGGGGGTCATCATTTCAATGAAGACTTCGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTTCAAATTTATACCTGGAAAGATG
CTACTCTTCGTGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCCAAACTATCTTTTGCTTTGGTGTATCCCGACAGACATGGCCGGTTT
GTAGTGAGAGAGGTTGGGAAGACATTCTCATTTGGAAATGGACGATTAGACGATAGCTTGGCCTTGGCTGAACTCGGTTTTCAGGTA
Protein sequenceShow/hide protein sequence
MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRF
VVREVGKTFSFGNGRLDDSLALAELGFQV