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MS005781 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005781
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionrRNA adenine N(6)-methyltransferase
Genome locationscaffold254:1543093..1543200
RNA-Seq ExpressionMS005781
SyntenyMS005781
Gene Ontology termsGO:0031167 - rRNA methylation (biological process)
GO:0005759 - mitochondrial matrix (cellular component)
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597173.1 Ribosomal RNA small subunit methyltransferase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.1e-0783.33Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDF KCHVSSHM SLLKSIELSDSKSQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
XP_022147255.1 ribosomal RNA small subunit methyltransferase, chloroplastic isoform X1 [Momordica charantia]5.4e-0780.56Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDFVKCHVSSHM+SLLK +ELSDSKSQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
XP_022147256.1 ribosomal RNA small subunit methyltransferase, chloroplastic isoform X2 [Momordica charantia]5.4e-0780.56Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDFVKCHVSSHM+SLLK +ELSDSKSQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
XP_022942262.1 ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita moschata]7.1e-0783.33Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDF KCHVSSHM SLLKSIELSDSKSQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
XP_038878140.1 ribosomal RNA small subunit methyltransferase, chloroplastic [Benincasa hispida]1.9e-0783.33Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDFVKCHVSSHM+SLLKSIELSDS+SQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
TrEMBL top hitse value%identityAlignment
A0A5A7U5Y1 rRNA adenine N(6)-methyltransferase1.7e-0675Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDFVKCHVSSHM+S LKSIELS+++SQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
A0A6J1CZM8 rRNA adenine N(6)-methyltransferase2.6e-0780.56Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDFVKCHVSSHM+SLLK +ELSDSKSQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
A0A6J1D1T5 rRNA adenine N(6)-methyltransferase2.6e-0780.56Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDFVKCHVSSHM+SLLK +ELSDSKSQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
A0A6J1FPR1 rRNA adenine N(6)-methyltransferase3.4e-0783.33Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDF KCHVSSHM SLLKSIELSDSKSQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
A0A6J1IAM1 rRNA adenine N(6)-methyltransferase7.7e-0780.56Show/hide
Query:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        ++VLNEDF KCH+SSHM SLLKSIELSDSKSQP K+
Subjt:  MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G01860.1 Ribosomal RNA adenine dimethylase family protein4.6e-0454.29Show/hide
Query:  QVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
        +VL EDFVKCH+ SHMLS+L++  LS   S   K+
Subjt:  QVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTTCTAAATGAGGACTTTGTTAAATGCCATGTGAGTTCACATATGCTGTCATTGCTCAAAAGTATTGAGTTGTCAGATTCAAAATCACAACCTGAAAAAATA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTTCTAAATGAGGACTTTGTTAAATGCCATGTGAGTTCACATATGCTGTCATTGCTCAAAAGTATTGAGTTGTCAGATTCAAAATCACAACCTGAAAAAATA
Protein sequenceShow/hide protein sequence
MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI