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MS005836 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005836
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 1, chloroplastic
Genome locationscaffold254:1935774..1935893
RNA-Seq ExpressionMS005836
SyntenyMS005836
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575629.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.0e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
XP_022145001.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Momordica charantia]6.0e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
XP_022953552.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata]6.0e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
XP_023548446.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subsp. pepo]6.0e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
XP_038896546.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]6.0e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
TrEMBL top hitse value%identityAlignment
A0A1S3CEK1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic2.9e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
A0A5A7UYW0 Photosynthetic NDH subunit of subcomplex B 12.9e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
A0A6J1CV27 photosynthetic NDH subunit of subcomplex B 1, chloroplastic2.9e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
A0A6J1GNJ2 photosynthetic NDH subunit of subcomplex B 1, chloroplastic2.9e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
A0A7C9CE88 Uncharacterized protein2.9e-0773.33Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFPAI+LL D Y GVQIDVV SARGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
SwissProt top hitse value%identityAlignment
Q9S9N6 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic1.3e-0757.78Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFP I+L+ D Y GVQ+D++ + RGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
Arabidopsis top hitse value%identityAlignment
AT1G15980.1 NDH-dependent cyclic electron flow 19.0e-0957.78Show/hide
Query:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY
        ENLLFFP I+L+ D Y GVQ+D++ + RGK     NKNV W NVY
Subjt:  ENLLFFPAIKLLVDWYSGVQIDVVVSARGK-----NKNVTWFNVY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGAACTTGCTTTTCTTTCCGGCCATTAAATTGCTCGTGGATTGGTACTCGGGAGTCCAAATCGATGTGGTGGTTTCGGCCAGGGGAAAAAACAAAAATGTGACATGGTT
TAATGTTTAC
mRNA sequenceShow/hide mRNA sequence
GAGAACTTGCTTTTCTTTCCGGCCATTAAATTGCTCGTGGATTGGTACTCGGGAGTCCAAATCGATGTGGTGGTTTCGGCCAGGGGAAAAAACAAAAATGTGACATGGTT
TAATGTTTAC
Protein sequenceShow/hide protein sequence
ENLLFFPAIKLLVDWYSGVQIDVVVSARGKNKNVTWFNVY