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MS005866 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005866
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionarabinogalactan peptide 20-like
Genome locationscaffold254:2095957..2096402
RNA-Seq ExpressionMS005866
SyntenyMS005866
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]1.3e-32100Show/hide
Query:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
        MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
Subjt:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]3.7e-2787.95Show/hide
Query:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSS--APAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
        MASS STSRAFS LFT F LI FI+SPLVDAHSS  APAPAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSS--APAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]3.3e-2888.89Show/hide
Query:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
        MASS STSRAFS LFT F LI FI+SPLVDAHSS PAPAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

XP_023538848.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]3.4e-2585Show/hide
Query:  ASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
        +SS ST  AFS  FT FALIFFI+SPLV AHSSA APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  ASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]2.6e-2587.65Show/hide
Query:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
        M SS STSRAFS LFT FALIFFI+SPLVDA   APAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY+FFLN
Subjt:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

TrEMBL top hitse value%identityAlignment
A0A6J1D1D7 arabinogalactan peptide 20-like6.3e-33100Show/hide
Query:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
        MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
Subjt:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

A0A6J1E8M6 arabinogalactan peptide 16-like1.8e-2787.95Show/hide
Query:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSS--APAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
        MASS STSRAFS LFT F LI FI+SPLVDAHSS  APAPAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSS--APAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

A0A6J1F1F2 arabinogalactan peptide 20-like8.2e-2584.81Show/hide
Query:  ASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFL
        +SS ST  AFS  FT FALIFFI+SPLV AHSSA APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFL
Subjt:  ASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFL

A0A6J1IAU1 arabinogalactan peptide 16-like8.2e-2583.75Show/hide
Query:  ASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
        +SS ST  AFS  FT FALIFFI+ PLV AHSSA APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  ASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

A0A6J1IQM6 arabinogalactan peptide 20-like2.8e-2583.13Show/hide
Query:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSS--APAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN
        MASS ST RAFS LFT F LI FI+SPL+DAHSS  +PAPAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASS NFFLN
Subjt:  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSS--APAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 164.8e-1466.67Show/hide
Query:  FTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA-SSYNFF
        F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SSY+FF
Subjt:  FTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA-SSYNFF

Q8L9T8 Arabinogalactan protein 415.9e-1263.08Show/hide
Query:  ISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH
        +S SR F  + T  ++IF I+ P+  AH+ + APAPAP SDGT+IDQGIAYVLML+ALVLTYLIH
Subjt:  ISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH

Q9FK16 Arabinogalactan protein 227.2e-1060.71Show/hide
Query:  LFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH
        +   F +I  I+ P+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  LFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH

Q9M373 Arabinogalactan protein 201.3e-1462.16Show/hide
Query:  SRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA--SSYNFF
        SR   ++   FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY FF
Subjt:  SRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA--SSYNFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.4e-1566.67Show/hide
Query:  FTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA-SSYNFF
        F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SSY+FF
Subjt:  FTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA-SSYNFF

AT3G61640.1 arabinogalactan protein 209.0e-1662.16Show/hide
Query:  SRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA--SSYNFF
        SR   ++   FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY FF
Subjt:  SRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA--SSYNFF

AT5G24105.1 arabinogalactan protein 414.2e-1363.08Show/hide
Query:  ISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH
        +S SR F  + T  ++IF I+ P+  AH+ + APAPAP SDGT+IDQGIAYVLML+ALVLTYLIH
Subjt:  ISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH

AT5G53250.1 arabinogalactan protein 225.1e-1160.71Show/hide
Query:  LFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH
        +   F +I  I+ P+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  LFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCATTTCCACTTCTAGGGCTTTCTCCAGCCTTTTCACCGCCTTCGCCCTCATCTTCTTCATTGTATCGCCACTTGTTGACGCCCACTCCTCCGCCCCTGC
TCCTGCTCCCGCTCCTGCAAGCGACGGGACCTCCATAGACCAAGGGATCGCGTACGTGCTGATGCTTCTGGCCTTGGTTCTCACATACCTCATCCACCCTCTCGATGCAT
CTTCCTACAACTTCTTTCTCAAT
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCTCCATTTCCACTTCTAGGGCTTTCTCCAGCCTTTTCACCGCCTTCGCCCTCATCTTCTTCATTGTATCGCCACTTGTTGACGCCCACTCCTCCGCCCCTGC
TCCTGCTCCCGCTCCTGCAAGCGACGGGACCTCCATAGACCAAGGGATCGCGTACGTGCTGATGCTTCTGGCCTTGGTTCTCACATACCTCATCCACCCTCTCGATGCAT
CTTCCTACAACTTCTTTCTCAAT
Protein sequenceShow/hide protein sequence
MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN