; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005916 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005916
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase II subunit 1-like
Genome locationscaffold254:2407308..2408175
RNA-Seq ExpressionMS005916
SyntenyMS005916
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048864.1 WW domain-binding protein 11-like [Cucumis melo var. makuwa]8.8e-6054.08Show/hide
Query:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPP--AASPAKKP-------------ATPSFKATVTRVASPPVKPARSP
        MANLPR+GR WQRLS+I R  PA A    EPEPEILPLAP  +TL+ FE  PPP  AA P+  P             A+P ++ATV   ASPP+KPARSP
Subjt:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPP--AASPAKKP-------------ATPSFKATVTRVASPPVKPARSP

Query:  PPSPAKKSSDRRHSI-PNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQ-QAEAINLTGHNV
        P SP +KS++ R+SI PNSYQ   +P +PTTP LS+L LPKS++ TT  S I  E +QK GP K       KSD   EY SG      QA+AINL G N+
Subjt:  PPSPAKKSSDRRHSI-PNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQ-QAEAINLTGHNV

Query:  GAVMEVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGA
        GAVM++ QF  SD  SGGE+ +K ETE GV+  ND+E+ +      R   FP T   NSNFQEVNNSV+Y+S+C  RDPGLHLDFSGK KD+ A
Subjt:  GAVMEVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGA

XP_011650663.1 gibberellin-regulated protein 14 [Cucumis sativus]2.8e-5851.68Show/hide
Query:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASP------------AKKPATPSFKATVTRVASPPVKPARSPPPS
        MANLPR+GR W RLST++R  P       EPEPEILPLAP  +TL+ FE  PP AA+P            +   A+P ++ATV R ASPP+KPARSPP S
Subjt:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASP------------AKKPATPSFKATVTRVASPPVKPARSPPPS

Query:  PAKKSSDRRHSI-PNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQAEAINLTGHNVGAVM
        P +KS D RHSI PNSYQ   +P +PT P LS+LALPKSA+ TT  S I  E +QK   +KK+  + +         +      QA+AINLTG N+GAVM
Subjt:  PAKKSSDRRHSI-PNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQAEAINLTGHNVGAVM

Query:  EVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGAIFDGAQNS
        ++ QF  SD  SGGE+ +K ET+ GV+  ND E+ +      R   FP T   NSNFQEVNNSVMY+S+C GRDPGLHLDFSG+ KD+ A  DG + S
Subjt:  EVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGAIFDGAQNS

XP_022147458.1 vegetative cell wall protein gp1-like [Momordica charantia]1.5e-5452.03Show/hide
Query:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASPAKKP-----------ATPSFKATVTRVASPPVKPARSPPPSP
        MANLPRFGRTWQR + +A P PA   P+           P T+TL+ FE N PP+ASPA  P           A+P ++A   RV S P K ARSPP SP
Subjt:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASPAKKP-----------ATPSFKATVTRVASPPVKPARSPPPSP

Query:  AKKSSDRRHSIPNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQAEAINLTGHNVGAVMEV
        A K SDR H+         K  +  TPPLS LALP++AN     S +  E ++K+  Y KTVEK  KS  PSE+GSGK    QAE INLTGHNVGAVME+
Subjt:  AKKSSDRRHSIPNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQAEAINLTGHNVGAVMEV

Query:  RQFSESDDRSGGEIVKKNETE---GGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSK-DDGAIFDG
         Q   S   S GEI+KK E+E   GG  HGN DERK G K     K  P TAFMNSNFQ VNNSV+YDS+C  RDPGLHL FS  +    GAI DG
Subjt:  RQFSESDDRSGGEIVKKNETE---GGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSK-DDGAIFDG

XP_022147499.1 uncharacterized protein LOC111016407 [Momordica charantia]1.9e-5497.44Show/hide
Query:  KQQAEAINLTGHNVGAVMEVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDK-QRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDF
        KQQAEAINLTGHNVGAVMEVRQFSESDDRSGGEI KKNETEGGVRHGNDDERKKGRKDK  RVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDF
Subjt:  KQQAEAINLTGHNVGAVMEVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDK-QRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDF

Query:  SGKSKDDGAIFDGAQNS
        SGKSKDDGAIFDGAQNS
Subjt:  SGKSKDDGAIFDGAQNS

XP_022974816.1 wiskott-Aldrich syndrome protein family member 2-like [Cucurbita maxima]1.6e-4849.15Show/hide
Query:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASPAKKPATPSFKATVTRVAS-PPVKPARSPPPSPAKKSSDRRHS
        M+N PRFGR  QR S  A P   T  PA+E +PE LP    ++TL+       PA  P    A+P +  +VT V S PP K   SPP SPAKK  DR  S
Subjt:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASPAKKPATPSFKATVTRVAS-PPVKPARSPPPSPAKKSSDRRHS

Query:  IPNSYQKTVKPHQPTTPPLSSLALP----KSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQ--AEAINLTGHNVGAVMEVRQFS
          +  Q   +  + + PP   LALP     + +  T Q RI  E ++K+  Y KTVEK  KSD P EYGSGK+ ++Q  AE+INL GHNVGAVME+ + S
Subjt:  IPNSYQKTVKPHQPTTPPLSSLALP----KSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQ--AEAINLTGHNVGAVMEVRQFS

Query:  ESDDRSGGEIVKKNETEG--GVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGAIFDGAQN
         S  R GGE V+KN+TEG  G R GN++++KK +KDK++ K  P TAFMNSNFQ VNNSV+YDS+C  RDPGLHL F+  +  DGA  DG +N
Subjt:  ESDDRSGGEIVKKNETEG--GVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGAIFDGAQN

TrEMBL top hitse value%identityAlignment
A0A0A0L8G8 Uncharacterized protein1.4e-5851.68Show/hide
Query:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASP------------AKKPATPSFKATVTRVASPPVKPARSPPPS
        MANLPR+GR W RLST++R  P       EPEPEILPLAP  +TL+ FE  PP AA+P            +   A+P ++ATV R ASPP+KPARSPP S
Subjt:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASP------------AKKPATPSFKATVTRVASPPVKPARSPPPS

Query:  PAKKSSDRRHSI-PNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQAEAINLTGHNVGAVM
        P +KS D RHSI PNSYQ   +P +PT P LS+LALPKSA+ TT  S I  E +QK   +KK+  + +         +      QA+AINLTG N+GAVM
Subjt:  PAKKSSDRRHSI-PNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQAEAINLTGHNVGAVM

Query:  EVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGAIFDGAQNS
        ++ QF  SD  SGGE+ +K ET+ GV+  ND E+ +      R   FP T   NSNFQEVNNSVMY+S+C GRDPGLHLDFSG+ KD+ A  DG + S
Subjt:  EVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGAIFDGAQNS

A0A5D3DB96 WW domain-binding protein 11-like4.3e-6054.08Show/hide
Query:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPP--AASPAKKP-------------ATPSFKATVTRVASPPVKPARSP
        MANLPR+GR WQRLS+I R  PA A    EPEPEILPLAP  +TL+ FE  PPP  AA P+  P             A+P ++ATV   ASPP+KPARSP
Subjt:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPP--AASPAKKP-------------ATPSFKATVTRVASPPVKPARSP

Query:  PPSPAKKSSDRRHSI-PNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQ-QAEAINLTGHNV
        P SP +KS++ R+SI PNSYQ   +P +PTTP LS+L LPKS++ TT  S I  E +QK GP K       KSD   EY SG      QA+AINL G N+
Subjt:  PPSPAKKSSDRRHSI-PNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQ-QAEAINLTGHNV

Query:  GAVMEVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGA
        GAVM++ QF  SD  SGGE+ +K ETE GV+  ND+E+ +      R   FP T   NSNFQEVNNSV+Y+S+C  RDPGLHLDFSGK KD+ A
Subjt:  GAVMEVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGA

A0A6J1D170 uncharacterized protein LOC1110164079.2e-5597.44Show/hide
Query:  KQQAEAINLTGHNVGAVMEVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDK-QRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDF
        KQQAEAINLTGHNVGAVMEVRQFSESDDRSGGEI KKNETEGGVRHGNDDERKKGRKDK  RVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDF
Subjt:  KQQAEAINLTGHNVGAVMEVRQFSESDDRSGGEIVKKNETEGGVRHGNDDERKKGRKDK-QRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDF

Query:  SGKSKDDGAIFDGAQNS
        SGKSKDDGAIFDGAQNS
Subjt:  SGKSKDDGAIFDGAQNS

A0A6J1D1D2 vegetative cell wall protein gp1-like7.1e-5552.03Show/hide
Query:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASPAKKP-----------ATPSFKATVTRVASPPVKPARSPPPSP
        MANLPRFGRTWQR + +A P PA   P+           P T+TL+ FE N PP+ASPA  P           A+P ++A   RV S P K ARSPP SP
Subjt:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASPAKKP-----------ATPSFKATVTRVASPPVKPARSPPPSP

Query:  AKKSSDRRHSIPNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQAEAINLTGHNVGAVMEV
        A K SDR H+         K  +  TPPLS LALP++AN     S +  E ++K+  Y KTVEK  KS  PSE+GSGK    QAE INLTGHNVGAVME+
Subjt:  AKKSSDRRHSIPNSYQKTVKPHQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQAEAINLTGHNVGAVMEV

Query:  RQFSESDDRSGGEIVKKNETE---GGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSK-DDGAIFDG
         Q   S   S GEI+KK E+E   GG  HGN DERK G K     K  P TAFMNSNFQ VNNSV+YDS+C  RDPGLHL FS  +    GAI DG
Subjt:  RQFSESDDRSGGEIVKKNETE---GGVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSK-DDGAIFDG

A0A6J1ICG8 wiskott-Aldrich syndrome protein family member 2-like7.6e-4949.15Show/hide
Query:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASPAKKPATPSFKATVTRVAS-PPVKPARSPPPSPAKKSSDRRHS
        M+N PRFGR  QR S  A P   T  PA+E +PE LP    ++TL+       PA  P    A+P +  +VT V S PP K   SPP SPAKK  DR  S
Subjt:  MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASPAKKPATPSFKATVTRVAS-PPVKPARSPPPSPAKKSSDRRHS

Query:  IPNSYQKTVKPHQPTTPPLSSLALP----KSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQ--AEAINLTGHNVGAVMEVRQFS
          +  Q   +  + + PP   LALP     + +  T Q RI  E ++K+  Y KTVEK  KSD P EYGSGK+ ++Q  AE+INL GHNVGAVME+ + S
Subjt:  IPNSYQKTVKPHQPTTPPLSSLALP----KSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQ--AEAINLTGHNVGAVMEVRQFS

Query:  ESDDRSGGEIVKKNETEG--GVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGAIFDGAQN
         S  R GGE V+KN+TEG  G R GN++++KK +KDK++ K  P TAFMNSNFQ VNNSV+YDS+C  RDPGLHL F+  +  DGA  DG +N
Subjt:  ESDDRSGGEIVKKNETEG--GVRHGNDDERKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGAIFDGAQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATCTTCCTCGCTTTGGTCGTACATGGCAGCGTCTTTCCACAATTGCACGCCCTTTTCCGGCCACCGCAAATCCTGCTTCAGAACCAGAGCCTGAGATTCTGCC
ACTTGCTCCGGCCACCGAAACTCTCGAATCTTTCGAGTCCAACCCACCGCCGGCGGCTTCTCCGGCCAAGAAACCTGCCACGCCAAGTTTCAAAGCTACTGTCACACGTG
TAGCCAGCCCGCCGGTGAAGCCTGCACGATCCCCTCCGCCCTCTCCTGCAAAGAAATCTTCCGACCGGAGACATTCAATTCCTAATTCGTATCAGAAAACCGTCAAGCCT
CACCAACCAACCACGCCACCACTTTCCTCTCTGGCTCTGCCTAAATCTGCAAATGCGACGACGGCTCAATCCAGAATCTCGCTGGAGACGAAGCAGAAAGCCGGTCCATA
CAAAAAGACCGTCGAGAAGGCGGAGAAGTCGGACTGGCCGTCTGAGTACGGATCCGGAAAAGCCGCCAAGCAGCAGGCGGAGGCTATAAACCTTACCGGACATAACGTAG
GCGCGGTCATGGAAGTACGCCAATTCTCCGAATCCGATGATCGTTCAGGCGGAGAAATCGTCAAGAAGAACGAAACAGAAGGCGGCGTCCGCCATGGAAATGATGATGAG
AGGAAGAAGGGAAGGAAGGATAAACAAAGAGTAAAGGGATTTCCAAGGACGGCATTCATGAACAGTAATTTTCAAGAAGTGAATAATTCTGTAATGTATGATTCGACGTG
CAGGGGCCGTGATCCAGGGCTGCACCTTGATTTCTCCGGGAAGTCGAAGGATGATGGAGCCATTTTCGACGGCGCCCAGAACTCT
mRNA sequenceShow/hide mRNA sequence
ATGGCAAATCTTCCTCGCTTTGGTCGTACATGGCAGCGTCTTTCCACAATTGCACGCCCTTTTCCGGCCACCGCAAATCCTGCTTCAGAACCAGAGCCTGAGATTCTGCC
ACTTGCTCCGGCCACCGAAACTCTCGAATCTTTCGAGTCCAACCCACCGCCGGCGGCTTCTCCGGCCAAGAAACCTGCCACGCCAAGTTTCAAAGCTACTGTCACACGTG
TAGCCAGCCCGCCGGTGAAGCCTGCACGATCCCCTCCGCCCTCTCCTGCAAAGAAATCTTCCGACCGGAGACATTCAATTCCTAATTCGTATCAGAAAACCGTCAAGCCT
CACCAACCAACCACGCCACCACTTTCCTCTCTGGCTCTGCCTAAATCTGCAAATGCGACGACGGCTCAATCCAGAATCTCGCTGGAGACGAAGCAGAAAGCCGGTCCATA
CAAAAAGACCGTCGAGAAGGCGGAGAAGTCGGACTGGCCGTCTGAGTACGGATCCGGAAAAGCCGCCAAGCAGCAGGCGGAGGCTATAAACCTTACCGGACATAACGTAG
GCGCGGTCATGGAAGTACGCCAATTCTCCGAATCCGATGATCGTTCAGGCGGAGAAATCGTCAAGAAGAACGAAACAGAAGGCGGCGTCCGCCATGGAAATGATGATGAG
AGGAAGAAGGGAAGGAAGGATAAACAAAGAGTAAAGGGATTTCCAAGGACGGCATTCATGAACAGTAATTTTCAAGAAGTGAATAATTCTGTAATGTATGATTCGACGTG
CAGGGGCCGTGATCCAGGGCTGCACCTTGATTTCTCCGGGAAGTCGAAGGATGATGGAGCCATTTTCGACGGCGCCCAGAACTCT
Protein sequenceShow/hide protein sequence
MANLPRFGRTWQRLSTIARPFPATANPASEPEPEILPLAPATETLESFESNPPPAASPAKKPATPSFKATVTRVASPPVKPARSPPPSPAKKSSDRRHSIPNSYQKTVKP
HQPTTPPLSSLALPKSANATTAQSRISLETKQKAGPYKKTVEKAEKSDWPSEYGSGKAAKQQAEAINLTGHNVGAVMEVRQFSESDDRSGGEIVKKNETEGGVRHGNDDE
RKKGRKDKQRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLHLDFSGKSKDDGAIFDGAQNS