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MS005923 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005923
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin-responsive family protein
Genome locationscaffold254:2461483..2461788
RNA-Seq ExpressionMS005923
SyntenyMS005923
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597052.1 Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia]4.3e-4183.18Show/hide
Query:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF-RRH----HHHHV
        GG  G RQ    AAVP+GCLAVKVG +GE+QQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVE+FRHVQCMIDRENSF RRH    HHHH+
Subjt:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF-RRH----HHHHV

Query:  GCFRVSF
        GCFRVSF
Subjt:  GCFRVSF

XP_004133791.1 auxin-responsive protein SAUR32 [Cucumis sativus]3.3e-4179.46Show/hide
Query:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR----------H
        GGG  +RQ SAT  VPKGCLAVKVG +GEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTI IPCHVE+FRHVQ MIDRENSF R          H
Subjt:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR----------H

Query:  HHHHVGCFRVSF
        HHHH+GCFRVSF
Subjt:  HHHHVGCFRVSF

XP_022147445.1 auxin-responsive protein SAUR32-like [Momordica charantia]1.3e-53100Show/hide
Query:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRRHHHHHVGCFRV
        GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRRHHHHHVGCFRV
Subjt:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRRHHHHHVGCFRV

Query:  SF
        SF
Subjt:  SF

XP_023526937.1 auxin-responsive protein SAUR32-like [Cucurbita pepo subsp. pepo]6.6e-4283.02Show/hide
Query:  GGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR-----HHHHHVG
        GG  +RQ SA AAVPKGCLAV+VG + EEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTI IPCHVE+FRHVQ MIDRENSF R     HHHHHVG
Subjt:  GGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR-----HHHHHVG

Query:  CFRVSF
        CFRVSF
Subjt:  CFRVSF

XP_038900878.1 auxin-responsive protein SAUR32-like [Benincasa hispida]1.9e-4183.81Show/hide
Query:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR---HHHHHVGC
        GGG  +RQ S  AAVPKGCLAV+VG +GEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTI IPCHVE+FRHVQ MIDRENSF R   HHHHH+GC
Subjt:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR---HHHHHVGC

Query:  FRVSF
        FRVSF
Subjt:  FRVSF

TrEMBL top hitse value%identityAlignment
A0A0A0L5S7 Uncharacterized protein1.6e-4179.46Show/hide
Query:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR----------H
        GGG  +RQ SAT  VPKGCLAVKVG +GEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTI IPCHVE+FRHVQ MIDRENSF R          H
Subjt:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR----------H

Query:  HHHHVGCFRVSF
        HHHH+GCFRVSF
Subjt:  HHHHVGCFRVSF

A0A5D3DBZ9 Auxin-responsive family protein3.9e-4079.82Show/hide
Query:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR-------HHHH
        GGG  +RQ    AAVPKGCLAVKVG +GEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTI IPCHVE+FRHVQ MIDRENSF R       HH H
Subjt:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR-------HHHH

Query:  HVGCFRVSF
        H+GCFRVSF
Subjt:  HVGCFRVSF

A0A6J1D068 auxin-responsive protein SAUR32-like6.2e-54100Show/hide
Query:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRRHHHHHVGCFRV
        GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRRHHHHHVGCFRV
Subjt:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRRHHHHHVGCFRV

Query:  SF
        SF
Subjt:  SF

A0A6J1EEX5 auxin-responsive protein SAUR32-like2.1e-4185.44Show/hide
Query:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF-RRHHHHHVGCFR
        GGG  +RQ S  A VPKGCLAV+VG + EEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTI IPCHVE+FRHVQ MIDRENSF RRHHHHHVGCFR
Subjt:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF-RRHHHHHVGCFR

Query:  VSF
        VSF
Subjt:  VSF

A0A6J1ICI8 auxin-responsive protein SAUR32-like3.5e-4182.69Show/hide
Query:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF-RRHH-HHHVGCF
        GG  G  +  +  AVP+GCLAVKVG +GE+QQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVE+FRHVQCMIDRENSF RRHH HHH+GCF
Subjt:  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF-RRHH-HHHVGCF

Query:  RVSF
        RVSF
Subjt:  RVSF

SwissProt top hitse value%identityAlignment
O22150 Auxin-responsive protein SAUR363.9e-1348.65Show/hide
Query:  VPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFR
        VP+G LA+ VG +  +  R +VP++YFNHP F +LL+EAE+EYGF  +G ITIPC    F  V+  I   +S R
Subjt:  VPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFR

P33081 Auxin-induced protein 15A1.1e-1050Show/hide
Query:  GKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTITIPCHVEQFR
        G R+ S  A  PKG LAV V   GE+ +RFV+PV Y N P F  LL +AEEE+G+D   G +TIPC  + F+
Subjt:  GKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTITIPCHVEQFR

P33082 Auxin-induced protein X154.3e-1246.84Show/hide
Query:  GKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTITIPCHVEQFRHVQCMID
        G R+ S     PKG LAV V   GE+ +RFV+PV Y N P F  LL +AEEE+G+D   G +TIPC  E F+ + C ++
Subjt:  GKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTITIPCHVEQFRHVQCMID

Q41220 Auxin-responsive protein SAUR152.8e-1145.45Show/hide
Query:  KRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTITIPCHVEQFRHVQCMI
        +R+ S+T   P+G +AV VG   ++++R+VVPV Y N P F QLL ++EEE+G+D   G +TIPCH   F  V   I
Subjt:  KRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTITIPCHVEQFRHVQCMI

Q9ZUZ3 Auxin-responsive protein SAUR321.5e-3366.04Show/hide
Query:  KRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF---RRHHHHH--------
        ++Q      VPKGCLA+KVG QGEEQQRF+VPV+YFNHP FMQLLKEAE+EYGFDQKGTITIPCHVE+FR+VQ +ID E S      HHH H        
Subjt:  KRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF---RRHHHHH--------

Query:  -VGCFR
         VGCFR
Subjt:  -VGCFR

Arabidopsis top hitse value%identityAlignment
AT2G46690.1 SAUR-like auxin-responsive protein family1.1e-3466.04Show/hide
Query:  KRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF---RRHHHHH--------
        ++Q      VPKGCLA+KVG QGEEQQRF+VPV+YFNHP FMQLLKEAE+EYGFDQKGTITIPCHVE+FR+VQ +ID E S      HHH H        
Subjt:  KRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSF---RRHHHHH--------

Query:  -VGCFR
         VGCFR
Subjt:  -VGCFR

AT3G61900.1 SAUR-like auxin-responsive protein family1.4e-2980.56Show/hide
Query:  VPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENS
        VPKGCLA+KVG + EE+QRFVVPV YFNHP FMQLL+EAEEEYGF+QKGTITIPCHVE FR+VQ MI+RE S
Subjt:  VPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENS

AT4G00880.1 SAUR-like auxin-responsive protein family7.8e-3371.88Show/hide
Query:  VPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENS-------FRRHHHHH---VGCFRV
        VPKGCLAVKVG QGEEQ+RFV+PVMYFNHP F QLLKEAEEE+GF QKGTITIPCHVE+FR+VQ +IDREN+          HHHHH   + CFRV
Subjt:  VPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENS-------FRRHHHHH---VGCFRV

AT4G22620.1 SAUR-like auxin-responsive protein family6.0e-1752.56Show/hide
Query:  TAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR
        T  VP+G L V VG  GE+ +R VVPV+YFNHP F +LL++AE  YGF+Q G I IPC V  F  VQ  I   +  RR
Subjt:  TAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRR

AT5G53590.1 SAUR-like auxin-responsive protein family8.1e-2249.48Show/hide
Query:  VPKGCLAVKVGHQGEEQ--QRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFR-----------RHHHHHVGCF
        VPKGC+A+ VGH+ +E+   RFVVP+++ +HP F+ LLKEAE+EYGF   G ITIPC V++F+HVQ +ID E   R            HH++H+ CF
Subjt:  VPKGCLAVKVGHQGEEQ--QRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFR-----------RHHHHHVGCF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCGGCGGCCACGGCAAAAGGCAAGGCTCCGCCACCGCCGCCGTCCCGAAAGGGTGCTTGGCCGTGAAAGTGGGCCACCAGGGGGAAGAACAGCAGAGATTTGTGGTGCC
GGTGATGTATTTCAATCACCCGCGGTTCATGCAGCTGCTCAAAGAGGCGGAGGAGGAGTACGGATTCGACCAGAAGGGGACAATCACCATCCCTTGCCACGTGGAGCAGT
TCCGGCACGTGCAGTGCATGATCGACCGCGAAAATTCCTTCCGCCGCCACCACCACCACCACGTCGGATGCTTCCGGGTTTCATTC
mRNA sequenceShow/hide mRNA sequence
GGCGGCGGCCACGGCAAAAGGCAAGGCTCCGCCACCGCCGCCGTCCCGAAAGGGTGCTTGGCCGTGAAAGTGGGCCACCAGGGGGAAGAACAGCAGAGATTTGTGGTGCC
GGTGATGTATTTCAATCACCCGCGGTTCATGCAGCTGCTCAAAGAGGCGGAGGAGGAGTACGGATTCGACCAGAAGGGGACAATCACCATCCCTTGCCACGTGGAGCAGT
TCCGGCACGTGCAGTGCATGATCGACCGCGAAAATTCCTTCCGCCGCCACCACCACCACCACGTCGGATGCTTCCGGGTTTCATTC
Protein sequenceShow/hide protein sequence
GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQCMIDRENSFRRHHHHHVGCFRVSF