; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005932 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005932
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAlba domain-containing protein
Genome locationscaffold254:2504249..2504963
RNA-Seq ExpressionMS005932
SyntenyMS005932
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582358.1 hypothetical protein SDJN03_22360, partial [Cucurbita argyrosperma subsp. sororia]4.9e-5088.98Show/hide
Query:  MESAIVVSEA-TEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MES +VVSEA +EVK+EIRNE EKLLVVAPDG+VKEIAVLTE KKK+NQIQVSNVK+PFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MESAIVVSEA-TEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  ASEKNLTISSVSLKNGENDRLVMKPKV
        A +K LTISSVSLKNGENDRLVMKPK+
Subjt:  ASEKNLTISSVSLKNGENDRLVMKPKV

KAG7018769.1 hypothetical protein SDJN02_20642 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-4887.6Show/hide
Query:  MESAIVVSEA-TEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGM--AIPTVVTIAEILKKN
        MES +VVSEA +EVK+EIRNE EKLLVVAPDG+VKEIAVLTE KKK+NQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGM   IPTVVTIAEILKKN
Subjt:  MESAIVVSEA-TEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGM--AIPTVVTIAEILKKN

Query:  GLASEKNLTISSVSLKNGENDRLVMKPKV
        GLA +K LTISSVSLKNGENDRLVMKPK+
Subjt:  GLASEKNLTISSVSLKNGENDRLVMKPKV

XP_022147424.1 uncharacterized protein At2g34160-like [Momordica charantia]1.4e-5799.21Show/hide
Query:  MESAIVVSEATEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA
        MESAIVVSEATEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA
Subjt:  MESAIVVSEATEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA

Query:  SEKNLTISSVSLKNGENDRLVMKPKV
        SEKNLTISSVSLKNGENDRLVMKPK+
Subjt:  SEKNLTISSVSLKNGENDRLVMKPKV

XP_022924600.1 uncharacterized protein At2g34160-like [Cucurbita moschata]4.9e-5088.98Show/hide
Query:  MESAIVVSEA-TEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MES +VVSEA +E+K+EIRNE EKLLVVAPDG+VKEIAVLTE KKK+NQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MESAIVVSEA-TEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  ASEKNLTISSVSLKNGENDRLVMKPKV
        A +K LTISSVSLKNGENDRLVMKPK+
Subjt:  ASEKNLTISSVSLKNGENDRLVMKPKV

XP_022980835.1 uncharacterized protein At2g34160-like [Cucurbita maxima]8.4e-5089.76Show/hide
Query:  MESAIVVSEAT-EVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MES +VVSEAT EVK+EIRNE EKLLVVAPD +VKEIAVLTE KKK+NQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MESAIVVSEAT-EVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  ASEKNLTISSVSLKNGENDRLVMKPKV
        A +K LTISSVSLKNGENDRLVMKPK+
Subjt:  ASEKNLTISSVSLKNGENDRLVMKPKV

TrEMBL top hitse value%identityAlignment
A0A1S3AXD3 uncharacterized protein At2g34160-like1.7e-4885.83Show/hide
Query:  MESAIVVSEAT-EVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+S  VVSEAT EVK+EI+NE EKLLV APD +VKEIAVLTEFKKK+NQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MESAIVVSEAT-EVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  ASEKNLTISSVSLKNGENDRLVMKPKV
        A +KNLTISSVSLKNGEN +LVMKPK+
Subjt:  ASEKNLTISSVSLKNGENDRLVMKPKV

A0A5D3CZ81 Alba DNA/RNA-binding protein1.7e-4885.83Show/hide
Query:  MESAIVVSEAT-EVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+S  VVSEAT EVK+EI+NE EKLLV APD +VKEIAVLTEFKKK+NQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MESAIVVSEAT-EVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  ASEKNLTISSVSLKNGENDRLVMKPKV
        A +KNLTISSVSLKNGEN +LVMKPK+
Subjt:  ASEKNLTISSVSLKNGENDRLVMKPKV

A0A6J1D0Y9 uncharacterized protein At2g34160-like6.9e-5899.21Show/hide
Query:  MESAIVVSEATEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA
        MESAIVVSEATEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA
Subjt:  MESAIVVSEATEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA

Query:  SEKNLTISSVSLKNGENDRLVMKPKV
        SEKNLTISSVSLKNGENDRLVMKPK+
Subjt:  SEKNLTISSVSLKNGENDRLVMKPKV

A0A6J1EFH1 uncharacterized protein At2g34160-like2.4e-5088.98Show/hide
Query:  MESAIVVSEA-TEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MES +VVSEA +E+K+EIRNE EKLLVVAPDG+VKEIAVLTE KKK+NQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MESAIVVSEA-TEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  ASEKNLTISSVSLKNGENDRLVMKPKV
        A +K LTISSVSLKNGENDRLVMKPK+
Subjt:  ASEKNLTISSVSLKNGENDRLVMKPKV

A0A6J1IXN8 uncharacterized protein At2g34160-like4.0e-5089.76Show/hide
Query:  MESAIVVSEAT-EVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MES +VVSEAT EVK+EIRNE EKLLVVAPD +VKEIAVLTE KKK+NQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MESAIVVSEAT-EVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  ASEKNLTISSVSLKNGENDRLVMKPKV
        A +K LTISSVSLKNGENDRLVMKPK+
Subjt:  ASEKNLTISSVSLKNGENDRLVMKPKV

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341601.1e-2061.45Show/hide
Query:  KKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSVSLKNGENDRLVMKPKV
        +KKN+IQVSN KKP F+Y NL+KRY++QYN+VELSALGMAI TVVT+ EILK NG A EK +  S+V +K+    R V K K+
Subjt:  KKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSVSLKNGENDRLVMKPKV

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein1.0e-2161.45Show/hide
Query:  KKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSVSLKNGENDRLVMKPKV
        +KKN+IQVSN KKP F+Y NL+KRY++QY +VELSALGMAI TVVT+AEILK NG A EK +  S+V +K+    R V K K+
Subjt:  KKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSVSLKNGENDRLVMKPKV

AT2G34160.1 Alba DNA/RNA-binding protein7.9e-2261.45Show/hide
Query:  KKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSVSLKNGENDRLVMKPKV
        +KKN+IQVSN KKP F+Y NL+KRY++QYN+VELSALGMAI TVVT+ EILK NG A EK +  S+V +K+    R V K K+
Subjt:  KKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSVSLKNGENDRLVMKPKV

AT3G04620.1 Alba DNA/RNA-binding protein1.9e-2355.66Show/hide
Query:  NEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSVSLKNGENDRL
        +E+ +V+AP        V T    KKN+IQVSN KKP F+Y NL+KRYI+Q+NEVELSALGMAI TVVTI+EILK NGLA+EK +  S+V +K+    ++
Subjt:  NEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSVSLKNGENDRL

Query:  VMKPKV
        V K K+
Subjt:  VMKPKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCGCCATAGTCGTCTCGGAGGCCACTGAGGTCAAGAGTGAAATCCGAAACGAGAACGAAAAGCTTCTCGTCGTTGCTCCTGATGGTAAAGTCAAGGAGATTGC
TGTTTTGACCGAGTTTAAGAAGAAGAAGAACCAAATTCAGGTTTCCAACGTCAAGAAGCCGTTCTTCTACTACTACAATCTTTCCAAGAGGTACATTAAGCAGTACAACG
AAGTTGAGCTCTCTGCCTTAGGCATGGCTATACCCACAGTAGTGACAATTGCCGAGATTCTCAAGAAGAATGGATTGGCATCTGAAAAGAACTTGACGATATCTTCTGTC
AGTTTGAAGAATGGAGAAAATGACCGGCTGGTTATGAAACCTAAGGTAAACGCCTAC
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCGCCATAGTCGTCTCGGAGGCCACTGAGGTCAAGAGTGAAATCCGAAACGAGAACGAAAAGCTTCTCGTCGTTGCTCCTGATGGTAAAGTCAAGGAGATTGC
TGTTTTGACCGAGTTTAAGAAGAAGAAGAACCAAATTCAGGTTTCCAACGTCAAGAAGCCGTTCTTCTACTACTACAATCTTTCCAAGAGGTACATTAAGCAGTACAACG
AAGTTGAGCTCTCTGCCTTAGGCATGGCTATACCCACAGTAGTGACAATTGCCGAGATTCTCAAGAAGAATGGATTGGCATCTGAAAAGAACTTGACGATATCTTCTGTC
AGTTTGAAGAATGGAGAAAATGACCGGCTGGTTATGAAACCTAAGGTAAACGCCTAC
Protein sequenceShow/hide protein sequence
MESAIVVSEATEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFKKKKNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLASEKNLTISSV
SLKNGENDRLVMKPKVNAY