CuGenDBv2

Gene ID	MS005947
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosynthetic NDH subunit of subcomplex B 5, chloroplastic
Genome location	scaffold254:2627317..2629165
RNA-Seq Expression	MS005947
Synteny	MS005947
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR034569 - Photosynthetic NDH subunit of subcomplex B 5, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7028861.1 Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-104

85.65

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Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY
        MAL SSLP+LS NP+PKI+FKSSEI ATAFSN+           +LLGK A  S  RRLNAAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTY
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY

Query:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
        FEGEKKGTFWGAIADDI AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
Subjt:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI

Query:  WEFNEKYGDLWDFTVKNDDITKR
        WEFNEKYGDLWDFTVKNDDITKR
Subjt:  WEFNEKYGDLWDFTVKNDDITKR

XP_022147272.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Momordica charantia]

5.3e-118

99.53

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Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWG
        MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWG
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWG

Query:  AIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLW
        AIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFN+PGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLW
Subjt:  AIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLW

Query:  DFTVKNDDITKR
        DFTVKNDDITKR
Subjt:  DFTVKNDDITKR

XP_022948649.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata]

3.3e-104

85.65

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Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY
        MAL SSLP+LS NP+PKI+FKSS IRATAFSN+           +LLGK A  S  RRLNAAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTY
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY

Query:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
        FEGEKKGTFWGAIADDI AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
Subjt:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI

Query:  WEFNEKYGDLWDFTVKNDDITKR
        WEFNEKYGDLWDFTVKNDDITKR
Subjt:  WEFNEKYGDLWDFTVKNDDITKR

XP_022974431.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima]

1.7e-103

85.2

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Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY
        MAL SSLP+LS NP+PKI+FKSS I ATAFSN+           +LLGK A  S  RRLNAAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTY
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY

Query:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
        FEGEKKGTFWGAIADDI AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
Subjt:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI

Query:  WEFNEKYGDLWDFTVKNDDITKR
        WEFNEKYGDLWDFTVKNDDITKR
Subjt:  WEFNEKYGDLWDFTVKNDDITKR

XP_038878594.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida]

4.8e-103

85.14

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Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY
        MA  SSLP+LS NP+PKI+FKSSEI ATAFSN+           +LLG L  RS SRRLNAAGLS+IE DLNEDPVDRWETNSVS EDFEYG YDGHHTY
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY

Query:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
        FEGEKKGTFWGAIADDI AVGPPTGFQG+ISWLFLPAVAAGMYFN+PGEYLYIGAA+FTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
Subjt:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI

Query:  WEFNEKYGDLWDFTVKNDDITK
        WEFNEKYGDLWDFTVKN+DITK
Subjt:  WEFNEKYGDLWDFTVKNDDITK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AXF4 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2

5.2e-103

84.68

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Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAF-----------SNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY
        MA  SSLP+LS NP+PKI+F SSEI A  F           S+ +LLGKL  RS SRRLNAAGLS+IEPDLNEDPVDRWETNSVS EDFEYG YDGHHTY
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAF-----------SNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY

Query:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
        FEGEKKGTFWGAIADDI AVGPPTGFQG+ISWLFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
Subjt:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI

Query:  WEFNEKYGDLWDFTVKNDDITK
        WEFNEKYGDLWDFTVKNDDITK
Subjt:  WEFNEKYGDLWDFTVKNDDITK

A0A5A7U0K2 Photosynthetic NDH subunit of subcomplex B 5

5.2e-103

84.68

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Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAF-----------SNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY
        MA  SSLP+LS NP+PKI+F SSEI A  F           S+ +LLGKL  RS SRRLNAAGLS+IEPDLNEDPVDRWETNSVS EDFEYG YDGHHTY
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAF-----------SNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY

Query:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
        FEGEKKGTFWGAIADDI AVGPPTGFQG+ISWLFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
Subjt:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI

Query:  WEFNEKYGDLWDFTVKNDDITK
        WEFNEKYGDLWDFTVKNDDITK
Subjt:  WEFNEKYGDLWDFTVKNDDITK

A0A6J1D1X6 photosynthetic NDH subunit of subcomplex B 5, chloroplastic

2.6e-118

99.53

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Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWG
        MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWG
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWG

Query:  AIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLW
        AIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFN+PGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLW
Subjt:  AIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLW

Query:  DFTVKNDDITKR
        DFTVKNDDITKR
Subjt:  DFTVKNDDITKR

A0A6J1GAI7 photosynthetic NDH subunit of subcomplex B 5, chloroplastic

1.6e-104

85.65

Show/hide

Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY
        MAL SSLP+LS NP+PKI+FKSS IRATAFSN+           +LLGK A  S  RRLNAAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTY
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY

Query:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
        FEGEKKGTFWGAIADDI AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
Subjt:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI

Query:  WEFNEKYGDLWDFTVKNDDITKR
        WEFNEKYGDLWDFTVKNDDITKR
Subjt:  WEFNEKYGDLWDFTVKNDDITKR

A0A6J1IBC3 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1

8.0e-104

85.2

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Query:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY
        MAL SSLP+LS NP+PKI+FKSS I ATAFSN+           +LLGK A  S  RRLNAAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTY
Subjt:  MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTY

Query:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
        FEGEKKGTFWGAIADDI AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI
Subjt:  FEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDI

Query:  WEFNEKYGDLWDFTVKNDDITKR
        WEFNEKYGDLWDFTVKNDDITKR
Subjt:  WEFNEKYGDLWDFTVKNDDITKR

SwissProt top hits

e value

%identity

Alignment

Q9FG89 Photosynthetic NDH subunit of subcomplex B 5, chloroplastic

4.1e-73

63.51

Show/hide

Query:  SSLPLLSSNPVPKIVFKSSEIRAT-AFSNKRLLGKLATRSGSRRL-NAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGE-KKGTFWGA
        +++ +LS   +PK+       R +    N    GK   R    +L +AAGLSQIEPD+NEDP+ ++ETNS+  EDF+YG YDG HTY+EGE +KGTFWGA
Subjt:  SSLPLLSSNPVPKIVFKSSEIRAT-AFSNKRLLGKLATRSGSRRL-NAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGE-KKGTFWGA

Query:  IADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWD
        IADDI AV    GFQG+IS +FLPA+A GMYF+ PGEYL+IGAALFT+VFCIIEMDKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WD
Subjt:  IADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWD

Query:  FTVKNDDITKR
        FT++ DDI  R
Subjt:  FTVKNDDITKR

Arabidopsis top hits

e value

%identity

Alignment

AT5G43750.1 NAD(P)H dehydrogenase 18

2.9e-74

63.51

Show/hide

Query:  SSLPLLSSNPVPKIVFKSSEIRAT-AFSNKRLLGKLATRSGSRRL-NAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGE-KKGTFWGA
        +++ +LS   +PK+       R +    N    GK   R    +L +AAGLSQIEPD+NEDP+ ++ETNS+  EDF+YG YDG HTY+EGE +KGTFWGA
Subjt:  SSLPLLSSNPVPKIVFKSSEIRAT-AFSNKRLLGKLATRSGSRRL-NAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGE-KKGTFWGA

Query:  IADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWD
        IADDI AV    GFQG+IS +FLPA+A GMYF+ PGEYL+IGAALFT+VFCIIEMDKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WD
Subjt:  IADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWD

Query:  FTVKNDDITKR
        FT++ DDI  R
Subjt:  FTVKNDDITKR

Sequences

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CDS sequence

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ATGGCGCTCCGCTCTTCCCTTCCCCTTCTATCTTCCAATCCAGTCCCCAAAATCGTCTTCAAATCTTCTGAAATTAGGGCCACGGCGTTCTCGAACAAAAGATTGCTCGG
TAAATTGGCGACGAGAAGCGGCTCTCGGCGGCTGAATGCGGCAGGATTGTCCCAGATTGAACCCGATTTAAACGAAGACCCTGTAGATCGTTGGGAAACCAACAGTGTTA
GCGCTGAAGATTTTGAATATGGAAAATACGATGGACATCACACTTACTTTGAAGGCGAGAAAAAAGGCACATTCTGGGGAGCCATTGCAGATGATATTGTTGCAGTTGGA
CCACCAACAGGTTTTCAAGGCATCATCTCATGGCTCTTCCTACCAGCAGTTGCTGCTGGAATGTACTTCAATGTACCGGGGGAGTATCTGTACATTGGAGCAGCTTTATT
TACAATAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAACCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACT
ATAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTGAAAAATGATGATATAACAAAGAGA

mRNA sequence

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Protein sequence

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MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAVG
PPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR

MS005947 (gene) of Bitter gourd (TR) v1 genome