CuGenDBv2

Gene ID	MS005955
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	vegetative cell wall protein gp1
Genome location	scaffold254:2683559..2684158
RNA-Seq Expression	MS005955
Synteny	MS005955
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6597407.1 hypothetical protein SDJN03_10587, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-43

63.55

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Query:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP
        MSC S  FSFTL+RKTLPI Y  S SSNLVIPS FLSHG  L  +NSAP    LL GDS        PEFPQKSPI EPS+P E+P+I T PE+DP +PP
Subjt:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP

Query:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP
        E     LPPL     PGP+FP  P+P PPGP+ P PP+PSPPGIDVPIPPH PPDIEPP+PG PVP P  LPPP P+  PPRP GPEI+TSPS P+ +PP
Subjt:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP

Query:  MAL
        +A+
Subjt:  MAL

TYK17238.1 hypothetical protein E5676_scaffold434G00890 [Cucumis melo var. makuwa]

9.3e-32

52.43

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Query:  KMSCNSAFFSFTLLRKTLPIYCYSPSSNLVIP-----SLFLSHGGLKIQNSAPLLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP
        +MSC S  FSFTL+ KTLP Y Y  SSN V P     S FLS        S  +L GDS        PEFP+  P+  PS+P E+P+    PE+DPS+P 
Subjt:  KMSCNSAFFSFTLLRKTLPIYCYSPSSNLVIP-----SLFLSHGGLKIQNSAPLLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP

Query:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPA------GPEIVTSPSP
        E+         P   P P+F   P P PPGPEFPKPP PSPPGIDVP+PP  PPDIEPP PG PVPGP  LPP  P+ +PPRP       GPEI+TSPSP
Subjt:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPA------GPEIVTSPSP

Query:  PEFVPP
         +FVPP
Subjt:  PEFVPP

XP_022949559.1 vegetative cell wall protein gp1 [Cucurbita moschata]

3.4e-42

62.56

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Query:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP
        MSC S  FSFTL+RKTLPI Y  S SSNLVIPS F SHG  L  +NSAP    LL GDS        PEFPQKSPI EPS+P E+P+I T PE+DP +PP
Subjt:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP

Query:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP
        E     LPPL     PGP+FP  P+P PPGP+ P PP+PSPPGIDVPIPPH PPDIEPP+PG PVP P  LPPP P+  PPRP GPEI+TSPS P+ +PP
Subjt:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP

Query:  MAL
        +++
Subjt:  MAL

XP_022975412.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]

1.4e-43

63.55

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Query:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP
        MSC S  FSFTL+RKTLPI Y  S SSNLVIPS FLSHG  L  +NSAP    LL GDS        PEFPQKSPI EPS+P E+P+I T PE+DP +PP
Subjt:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP

Query:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP
        E     LPP+     PGP+FP  P+P PPGP+FP PP+PSPPGIDVPIPPH PPDIEPP+PG PVP P  LPPP P+  PPRP GPEI TSPS P+ +PP
Subjt:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP

Query:  MAL
        +A+
Subjt:  MAL

XP_023539404.1 pistil-specific extensin-like protein [Cucurbita pepo subsp. pepo]

2.4e-40

61.39

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Query:  MSCNSAFFSFTLLRKTLPIYCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPPE
        MSC S  FSFTL+RKTLPIY YS SS    PS FLSHG  L  +NSAP    LL GDS        PEFPQKSPI EPS+P EVP+I   P +DP +PPE
Subjt:  MSCNSAFFSFTLLRKTLPIYCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPPE

Query:  VNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPPM
             LPP+     PGP+FP  P+P PPGP+ P PP+PSPPGIDVPIPPH PPDIEPP+PG PVP P  LPPP P+  PPRP GPEI+TSPS P+ +PP+
Subjt:  VNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPPM

Query:  AL
        A+
Subjt:  AL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4M0 Uncharacterized protein

8.0e-29

51.5

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Query:  SAFFSFTLLRKTLPIYCYSPSSNLVIPSLFLSHGGLKIQNSAP------LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPPEVNP
        ++ FSFTL+RKTLP Y Y  SSN  I     SH      N  P      LL GDS        PEFP+  P+  PS P E+P+    PE+DPS+P E+  
Subjt:  SAFFSFTLLRKTLPIYCYSPSSNLVIPSLFLSHGGLKIQNSAP------LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPPEVNP

Query:  ADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPA------GPEIVTSPSPPEFV
               P   P PEFP    P PPGPEFPKPPLPSPPGIDVP+PP  PP+IEPP PG PVP P  LPP  P+ VPPRP       GPEI+TS SPP FV
Subjt:  ADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPA------GPEIVTSPSPPEFV

A0A5D3D162 Uncharacterized protein

4.5e-32

52.43

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Query:  KMSCNSAFFSFTLLRKTLPIYCYSPSSNLVIP-----SLFLSHGGLKIQNSAPLLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP
        +MSC S  FSFTL+ KTLP Y Y  SSN V P     S FLS        S  +L GDS        PEFP+  P+  PS+P E+P+    PE+DPS+P 
Subjt:  KMSCNSAFFSFTLLRKTLPIYCYSPSSNLVIP-----SLFLSHGGLKIQNSAPLLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP

Query:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPA------GPEIVTSPSP
        E+         P   P P+F   P P PPGPEFPKPP PSPPGIDVP+PP  PPDIEPP PG PVPGP  LPP  P+ +PPRP       GPEI+TSPSP
Subjt:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPA------GPEIVTSPSP

Query:  PEFVPP
         +FVPP
Subjt:  PEFVPP

A0A5E4G125 PREDICTED: vegetative cell wall gp1

2.3e-15

41.09

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Query:  MSCNSAFFSFTLLRKTLPIYCYSPSSNLVIPSLFLSHGGLKIQNSAPL----LPGDSPEFPTKTPPEF--PQKSPIHEPSIPHEVPEIFTDPEVD--PSS
        MS + + FS TL+R+T+P   ++ S+     + FLS    K +   PL    LP    ++PT++PPEF  P      +PS P EVP I T P+VD  P  
Subjt:  MSCNSAFFSFTLLRKTLPIYCYSPSSNLVIPSLFLSHGGLKIQNSAPL----LPGDSPEFPTKTPPEF--PQKSPIHEPSIPHEVPEIFTDPEVD--PSS

Query:  PPEVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFV
        PPEVNP   PPL PD NPG +FP+PP   PP                        PDI PP P  P+P P  +PP  PD+VPP P GPEI+  P+PP   
Subjt:  PPEVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFV

Query:  PP
        PP
Subjt:  PP

A0A6J1GD64 vegetative cell wall protein gp1

1.7e-42

62.56

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Query:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP
        MSC S  FSFTL+RKTLPI Y  S SSNLVIPS F SHG  L  +NSAP    LL GDS        PEFPQKSPI EPS+P E+P+I T PE+DP +PP
Subjt:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP

Query:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP
        E     LPPL     PGP+FP  P+P PPGP+ P PP+PSPPGIDVPIPPH PPDIEPP+PG PVP P  LPPP P+  PPRP GPEI+TSPS P+ +PP
Subjt:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP

Query:  MAL
        +++
Subjt:  MAL

A0A6J1IL49 leucine-rich repeat extensin-like protein 3

6.7e-44

63.55

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Query:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP
        MSC S  FSFTL+RKTLPI Y  S SSNLVIPS FLSHG  L  +NSAP    LL GDS        PEFPQKSPI EPS+P E+P+I T PE+DP +PP
Subjt:  MSCNSAFFSFTLLRKTLPI-YCYSPSSNLVIPSLFLSHGG-LKIQNSAP----LLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPP

Query:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP
        E     LPP+     PGP+FP  P+P PPGP+FP PP+PSPPGIDVPIPPH PPDIEPP+PG PVP P  LPPP P+  PPRP GPEI TSPS P+ +PP
Subjt:  EVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP

Query:  MAL
        +A+
Subjt:  MAL

SwissProt top hits

e value

%identity

Alignment

Q9FPQ6 Vegetative cell wall protein gp1

2.2e-04

38.41

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Query:  APLLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPPEVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPH
        AP  PG     P   P   P       P+ P   P     P   P SP   +PA   P  P   P P  P PP+PSPP P  P PP P+PP    P+PP 
Subjt:  APLLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPPEVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPH

Query:  MPPDIEPPKPGIPVPGPGHLPPPI-PDVVPPRPAGPEIVTSPSPPEFVPPM
          P + PP P  P P P    PP+ P   PP PA P +  SP+PP   PP+
Subjt:  MPPDIEPPKPGIPVPGPGHLPPPI-PDVVPPRPAGPEIVTSPSPPEFVPPM

Arabidopsis top hits

e value

%identity

Alignment

AT3G19430.1 late embryogenesis abundant protein-related / LEA protein-related

2.3e-04

36.42

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Query:  APLLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPPEVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPP--LPSPPGIDVPIP
        +P  P  +P  P+ TPP  P   P   PS+P   P +   P   P+  P V P+  PP+  D  P P  P+ P P  P P  P PP   P+PP   VP P
Subjt:  APLLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPPEVNPADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPP--LPSPPGIDVPIP

Query:  PHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP
        P + P   PP P +P P         PDV P  P  P + T    P +VPP
Subjt:  PHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPP

AT5G43770.1 proline-rich family protein

1.3e-10

46.76

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Query:  PGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPS-SPPEVN--PADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHM
        PG SP    K  P  P + P      P EVPE+   PE+ PS +PPEV   P+D PPLGP Q PGPEFP+PP+PSPP P+ P PP P  P      P  +
Subjt:  PGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPS-SPPEVN--PADLPPLGPDQNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHM

Query:  PPDIEPPKPGIPVPGPGHLPP--PIPDVVPPRPAGPEIV
        PP  EPP+P      P   PP  P P + PP P GP I+
Subjt:  PPDIEPPKPGIPVPGPGHLPP--PIPDVVPPRPAGPEIV

Sequences

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CDS sequence

Show/hide CDS sequence

TGCCGTAAAATGTCGTGCAATTCAGCCTTCTTTTCCTTCACTCTCCTCAGGAAGACGCTTCCCATTTATTGCTATTCTCCGTCTTCCAATCTCGTGATACCTTCGCTTTT
CCTTTCCCATGGCGGACTCAAGATTCAAAACTCTGCGCCTCTGCTTCCCGGAGACTCGCCGGAGTTTCCGACCAAGACCCCTCCGGAGTTCCCCCAAAAAAGCCCCATTC
ACGAGCCGTCTATTCCCCACGAAGTTCCGGAAATTTTCACTGATCCGGAGGTTGACCCGAGCTCTCCACCGGAAGTGAACCCGGCGGATCTTCCGCCGTTAGGTCCAGAC
CAGAATCCCGGACCGGAATTTCCAATTCCGCCGGCTCCGTCGCCTCCGGGGCCCGAATTTCCCAAGCCTCCATTGCCGTCGCCTCCGGGAATCGACGTCCCGATACCGCC
CCATATGCCACCAGATATAGAACCGCCGAAGCCCGGGATACCGGTGCCGGGGCCGGGCCATCTGCCGCCGCCGATACCGGATGTGGTGCCGCCGAGGCCCGCCGGCCCGG
AGATCGTGACTTCGCCATCTCCGCCTGAATTTGTTCCTCCGATGGCCTTA

mRNA sequence

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Protein sequence

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CRKMSCNSAFFSFTLLRKTLPIYCYSPSSNLVIPSLFLSHGGLKIQNSAPLLPGDSPEFPTKTPPEFPQKSPIHEPSIPHEVPEIFTDPEVDPSSPPEVNPADLPPLGPD
QNPGPEFPIPPAPSPPGPEFPKPPLPSPPGIDVPIPPHMPPDIEPPKPGIPVPGPGHLPPPIPDVVPPRPAGPEIVTSPSPPEFVPPMAL

MS005955 (gene) of Bitter gourd (TR) v1 genome