CuGenDBv2

Gene ID	MS005976
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein RDM1-like
Genome location	scaffold254:2885220..2885893
RNA-Seq Expression	MS005976
Synteny	MS005976
Gene Ontology terms	GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domains	IPR015270 - Protein RDM1, plant IPR036319 - RDM1 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-82

87.36

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAK +TSE +  KRAEMYQEYM+ IPIPAHRGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLD++IHPSKAEATVW+VEEIHRRTS HHHV KLWLSD+MH VYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

XP_022159295.1 protein RDM1-like [Momordica charantia]

3.7e-85

90.8

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAK ITSE L TKRAEMYQEYM+ IPIPAHRGSVIPFTTW+GLGKSIKQLY QPL 
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLD++IHPSKAEAT+WMVEEIHRRTS HHHV KLWLSD MHH YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

XP_022951070.1 protein RDM1-like [Cucurbita moschata]

1.7e-82

87.36

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAK +TSE +  KRAEMYQEYM+ IPIPAHRGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLD++IHPSKAEATVW+VEEIHRRTS HHHV KLWLSD+MH VYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

XP_022974457.1 protein RDM1-like [Cucurbita maxima]

2.0e-83

87.93

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAK +TSE +  KRAEMYQEYM+ IPIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLD++IHPSKAEATVW+VEEIHRRTS HHHV KLWLSD+MH VYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]

7.7e-83

87.36

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAK +TS+ +  KRAEMYQEYM+ IPIPAHRGSVIPFTTWMGLGKSIKQLY QPLH
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLD++IHPSKAEATVW+VEEIHRRTS HHHV KLWLSD+MH VYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E3H6 protein RDM1-like

1.8e-85

90.8

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAK ITSE L TKRAEMYQEYM+ IPIPAHRGSVIPFTTW+GLGKSIKQLY QPL 
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLD++IHPSKAEAT+WMVEEIHRRTS HHHV KLWLSD MHH YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

A0A6J1GHM4 protein RDM1-like

8.3e-83

87.36

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAK +TSE +  KRAEMYQEYM+ IPIPAHRGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLD++IHPSKAEATVW+VEEIHRRTS HHHV KLWLSD+MH VYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

A0A6J1GV10 protein RDM1

1.1e-79

85.63

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVD+ISSGESSSSDSE G QNDGFEFKPSMDD KIPAK +T+E +  KRAEMYQEYM+ I IPA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLD+VIHPSKAEATVW+VEEIHRRTS HHHV KLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

A0A6J1IGA1 protein RDM1-like

9.8e-84

87.93

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAK +TSE +  KRAEMYQEYM+ IPIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLD++IHPSKAEATVW+VEEIHRRTS HHHV KLWLSD+MH VYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

A0A6J1INZ9 protein RDM1-like

2.5e-79

85.06

Show/hide

Query:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMP NEQVD+ISSGESSSSDSE G QNDGFEFKPS+DD KIPAK +T+E +  KRAEMYQEYM+ I IPA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLD+VIHPSKAEATVW+VEEIHRRTS HHHV KLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

1.6e-43

49.7

Show/hide

Query:  MPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTN
        M  +  +++  SG+S SSD +        E       L    + +  E    +RAEMYQ+YM+ +PIP +RGS+IPFT+W+GL  S+KQLYGQPLHYLTN
Subjt:  MPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTN

Query:  IQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQ
        + L++WDQ RFG+  E + LDS+IHP+KAEAT+W+VEEIHR T  H H+  LW SD M+H ++D IFP+
Subjt:  IQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

1.2e-44

49.7

Show/hide

Query:  MPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTN
        M  +  +++  SG+S SSD +        E       L    + +  E    +RAEMYQ+YM+ +PIP +RGS+IPFT+W+GL  S+KQLYGQPLHYLTN
Subjt:  MPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMR-IPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTN

Query:  IQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQ
        + L++WDQ RFG+  E + LDS+IHP+KAEAT+W+VEEIHR T  H H+  LW SD M+H ++D IFP+
Subjt:  IQLKQWDQLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAGGCCAATGCCGTGTAACGAACAAGTGGATATTATTTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGTCAAAATGATGGGTTTGAGTTCAAGCC
TTCGATGGATGATTTGAAAATCCCTGCCAAAGGCATCACATCTGAATGTTTGTTTACTAAAAGGGCAGAAATGTATCAAGAATACATGAGAATACCAATTCCAGCACACC
GTGGTTCTGTAATACCATTTACAACATGGATGGGATTGGGCAAATCTATAAAGCAGCTATATGGTCAGCCTTTGCATTACCTGACTAATATTCAACTAAAACAGTGGGAT
CAATTAAGATTCGGAAGTTCGGATGAATATAAGCCATTGGATTCTGTAATTCATCCGAGTAAAGCCGAAGCAACCGTATGGATGGTTGAAGAGATTCATAGGCGCACCTC
ATTCCATCATCACGTTCCTAAACTTTGGCTATCAGACGCAATGCACCATGTGTATGTTGACTCCATTTTCCCCCAACTA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKRPMPCNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKGITSECLFTKRAEMYQEYMRIPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWD
QLRFGSSDEYKPLDSVIHPSKAEATVWMVEEIHRRTSFHHHVPKLWLSDAMHHVYVDSIFPQL

MS005976 (gene) of Bitter gourd (TR) v1 genome