; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005987 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005987
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationscaffold254:2985834..2986358
RNA-Seq ExpressionMS005987
SyntenyMS005987
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]1.1e-4890.43Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]2.0e-5091.3Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQQVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]1.8e-4890.43Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]1.1e-5091.3Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQQVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR

XP_022137757.1 pre-rRNA-processing protein TSR2 homolog [Momordica charantia]1.3e-5499.13Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE QVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEEHLQGSR
Subjt:  EQLMMIYEEHLQGSR

TrEMBL top hitse value%identityAlignment
A0A0A0L7I9 Uncharacterized protein5.2e-4990.43Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X28.9e-4990.43Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X19.5e-5191.3Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQQVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X28.9e-4990.43Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEE+L GSR
Subjt:  EQLMMIYEEHLQGSR

A0A6J1C959 pre-rRNA-processing protein TSR2 homolog6.3e-5599.13Show/hide
Query:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA
        MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE QVA
Subjt:  MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVA

Query:  EQLMMIYEEHLQGSR
        EQLMMIYEEHLQGSR
Subjt:  EQLMMIYEEHLQGSR

SwissProt top hitse value%identityAlignment
Q3KRG3 Pre-rRNA-processing protein TSR2 homolog6.4e-0429.67Show/hide
Query:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQG
        A+ +V   W  LQ+A+ N +GG  S QK+  +   +  +F+     L  +++E+ + E +   F+T ++DGS+  QVA+Q+  ++++  QG
Subjt:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQG

Q3T090 Pre-rRNA-processing protein TSR2 homolog4.0e-0632.26Show/hide
Query:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQGSR
        A+ +    W  LQ+A++N +GG  S +K+  L   V  +F R+   L ++++E+ L E ++  F+T +EDGS+  QV++QL  ++    +G R
Subjt:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQGSR

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog1.5e-0531.87Show/hide
Query:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQG
        A+ +    W  LQ+A++N +GG  S +K+  L   V  +F  +   L +E++E+ L E +   F+T +EDGS+  QV++QL  ++    +G
Subjt:  AISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQG

Q969E8 Pre-rRNA-processing protein TSR2 homolog1.5e-0531.18Show/hide
Query:  QTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQG
        +  + +    W  LQ+A++N +GG  S +K+  L   V  +F R+   L ++++E+ L E L   F+T +EDGS+  QV++QL  ++    +G
Subjt:  QTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQG

Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region1.0e-2562.89Show/hide
Query:  SGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQGS
        S LQ  I  + SRW GLQMA++NQWGG DS +KS  LA ++F   S+S   + VE++ENLLHESLLLSFNTEIEDGSIE +VAEQLM+++EEHL+G+
Subjt:  SGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEHLQGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCCAGTGACGGATTAGCCTCCACCAACTACAAGGCCGGATCTGTCTCCGGCCTCCAAACGGCCATTTCGTCGGTATTTTCTCGGTGGGACGGACTTCAAATGGC
CATTCAAAACCAATGGGGCGGTCGCGACTCTCACCAGAAATCTCTGAATCTCGCCTCCGATGTCTTCTCTTGGTTCTCTCGATCCAAACCTCCTCTGTACGTGGAAGATC
TGGAAAATTTGCTCCATGAGAGCTTGTTACTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGCAGGTAGCAGAGCAATTGATGATGATATACGAAGAACAT
TTGCAGGGAAGTCGC
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCCAGTGACGGATTAGCCTCCACCAACTACAAGGCCGGATCTGTCTCCGGCCTCCAAACGGCCATTTCGTCGGTATTTTCTCGGTGGGACGGACTTCAAATGGC
CATTCAAAACCAATGGGGCGGTCGCGACTCTCACCAGAAATCTCTGAATCTCGCCTCCGATGTCTTCTCTTGGTTCTCTCGATCCAAACCTCCTCTGTACGTGGAAGATC
TGGAAAATTTGCTCCATGAGAGCTTGTTACTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGCAGGTAGCAGAGCAATTGATGATGATATACGAAGAACAT
TTGCAGGGAAGTCGC
Protein sequenceShow/hide protein sequence
MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFSWFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQQVAEQLMMIYEEH
LQGSR