; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005993 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005993
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionFerredoxin
Genome locationscaffold254:3004252..3004689
RNA-Seq ExpressionMS005993
SyntenyMS005993
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR001041 - 2Fe-2S ferredoxin-type iron-sulfur binding domain
IPR010241 - Ferredoxin [2Fe-2S], plant
IPR012675 - Beta-grasp domain superfamily
IPR036010 - 2Fe-2S ferredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582296.1 Ferredoxin C 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.0e-6488.44Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFS  KQKQPTKLSSVFKLR TTQIG  +RRL+VRSYKVVIEHEGQ+TELEV+ DESIL SALD GL +PHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GY+LLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

XP_022138084.1 uncharacterized protein LOC111009341 [Momordica charantia]1.1e-74100Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQ
        MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQ
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQ

Query:  SEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        SEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
Subjt:  SEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

XP_022956084.1 uncharacterized protein LOC111457884 [Cucurbita moschata]2.1e-6588.44Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFS  KQKQPTKLSSVFKLRPTTQ+G  +RRL+VRSYKVVIEHEGQ+TELEV+ DESIL SALD GL +PHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GY+LLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

XP_022979429.1 uncharacterized protein LOC111479154 [Cucurbita maxima]8.0e-6588.44Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFS  KQKQPTKLSSVFKLR TTQIG  +RRL+VRSYKVVIEHEGQ+TELEV+ DESIL+SALD GL +PHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GY+LLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

XP_023526556.1 uncharacterized protein LOC111790026 [Cucurbita pepo subsp. pepo]1.2e-6589.12Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFS  KQKQPTKLSSVFKLRPTTQIG  +RRL+VRSYKVVIEHEGQ+TELEV+ DESIL SALD GL +PHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GY+LLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

TrEMBL top hitse value%identityAlignment
A0A0A0L4U6 Ferredoxin1.5e-6186.39Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFS  KQKQP KLSSV   RPTTQI   RRRL+VRSYKVVIEHEGQ+TELEV+ DESILSSALD+GL +PHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVV +GY+LLCVAYPRSDCHIKTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

A0A5D3D1U0 Ferredoxin2.6e-6185.71Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFS  KQKQP KLSSV   +PTT I   RRRL+VRSYKVVIEHEGQ+TELEV+ DESILSSALD+GL +PHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GY+LLCVAYPRSDCHIKTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

A0A6J1C929 Ferredoxin5.4e-75100Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQ
        MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQ
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQ

Query:  SEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        SEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
Subjt:  SEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

A0A6J1GY17 Ferredoxin1.0e-6588.44Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFS  KQKQPTKLSSVFKLRPTTQ+G  +RRL+VRSYKVVIEHEGQ+TELEV+ DESIL SALD GL +PHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GY+LLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

A0A6J1IWL8 Ferredoxin3.9e-6588.44Show/hide
Query:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD
        MATLHFVPSAFS  KQKQPTKLSSVFKLR TTQIG  +RRL+VRSYKVVIEHEGQ+TELEV+ DESIL+SALD GL +PHDCKLGVCMTCPARLVSGAVD
Subjt:  MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGL-RRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVD

Query:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GY+LLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND

SwissProt top hitse value%identityAlignment
O23344 Ferredoxin C 1, chloroplastic9.5e-4577.78Show/hide
Query:  RLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLA
        R++ R+YKVV+EH+G++TELEVE DE+ILS ALDSGL VP+DC LGVCMTCPA+LV+G VDQS GMLSDDVVERGY LLC +YP SDCHIK IPEEELL+
Subjt:  RLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLA

Query:  LQLATAND
        LQLATAND
Subjt:  LQLATAND

P00248 Ferredoxin4.8e-2050Show/hide
Query:  SYKVVI--EHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL
        +YKV +  E EG +  +EV DD+ IL +A ++G+ +P+ C+ G C TC  +L+SG VDQS +  L DD +E GY L CVAYP SDC I+T  EEEL
Subjt:  SYKVVI--EHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL

P00252 Ferredoxin-14.8e-2051.06Show/hide
Query:  YKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL
        YKV +++ EG  T ++V DDE IL  A D GL +P+ C+ G C TC  ++VSG VDQS +  L DD +E+GY L CVAYP SD  I+T  EE+L
Subjt:  YKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL

P14937 Ferredoxin, root R-B21.4e-1951.06Show/hide
Query:  YKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL
        YKV +I  EG+  E EV+DD+ IL +A ++G+ +P+ C+ G C TC  ++V G VDQSEG  L DD  E+G+ L CVAYP+SDC I T  E EL
Subjt:  YKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL

Q9ZQG8 Ferredoxin-3, chloroplastic3.1e-1950Show/hide
Query:  YKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL
        YKV ++  +GQ  E EV+DD+ IL +A ++G+ +P+ C+ G C TC  ++VSG VDQS+G  L D  +E+GY L CVAYP+SDC I T  E EL
Subjt:  YKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL

Arabidopsis top hitse value%identityAlignment
AT1G10960.1 ferredoxin 11.9e-1640.52Show/hide
Query:  SVFKLRPTTQIGLRRRLLVRSYKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVERGYALLCVAY
        S+F L+ +T  G  R   + +YKV  I  EG+  E+E E+D  +L +A ++GL +P+ C+ G C +C  ++VSG++DQS +  L D+ +  GY L CVAY
Subjt:  SVFKLRPTTQIGLRRRLLVRSYKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVERGYALLCVAY

Query:  PRSDCHIKTIPEEELL
        P SD  I+T  EE ++
Subjt:  PRSDCHIKTIPEEELL

AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein2.1e-1536.51Show/hide
Query:  LKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVE
        L+        S+F L+  T  G  R   + +YKV  I  EG+  E+E +DD  +L +A ++G+ +P+ C+ G C +C  ++VSG+VDQS +  L D+ + 
Subjt:  LKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQS-EGMLSDDVVE

Query:  RGYALLCVAYPRSDCHIKTIPEEELL
         G+ L C AYP SD  I+T  EE+++
Subjt:  RGYALLCVAYPRSDCHIKTIPEEELL

AT2G27510.1 ferredoxin 32.2e-2050Show/hide
Query:  YKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL
        YKV ++  +GQ  E EV+DD+ IL +A ++G+ +P+ C+ G C TC  ++VSG VDQS+G  L D  +E+GY L CVAYP+SDC I T  E EL
Subjt:  YKV-VIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEG-MLSDDVVERGYALLCVAYPRSDCHIKTIPEEEL

AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein6.8e-4677.78Show/hide
Query:  RLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLA
        R++ R+YKVV+EH+G++TELEVE DE+ILS ALDSGL VP+DC LGVCMTCPA+LV+G VDQS GMLSDDVVERGY LLC +YP SDCHIK IPEEELL+
Subjt:  RLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVERGYALLCVAYPRSDCHIKTIPEEELLA

Query:  LQLATAND
        LQLATAND
Subjt:  LQLATAND

AT5G10000.1 ferredoxin 49.5e-1634.33Show/hide
Query:  VPSAFSPLKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKVV--IEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEG-
        V S  SP + +  T+L++      ++  G   ++  +  + V  I  EG+  E+E  +D  IL SA ++GL +P+ C+ G C TC  +LVSG VDQS G 
Subjt:  VPSAFSPLKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKVV--IEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEG-

Query:  MLSDDVVERGYALLCVAYPRSDCHIKTIPEEELL
         L ++ +++GY L C+A P  DC + T  + +L+
Subjt:  MLSDDVVERGYALLCVAYPRSDCHIKTIPEEELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCTTCATTTTGTTCCATCCGCTTTCTCTCCACTAAAACAAAAGCAACCCACAAAGCTTTCCTCTGTTTTCAAGCTCAGACCCACAACCCAGATCGGCTTACG
GCGGCGGTTGCTCGTTCGATCGTACAAAGTGGTGATTGAGCACGAGGGGCAGAGCACCGAGCTGGAGGTTGAAGACGACGAGAGCATATTGAGCAGCGCATTGGATTCTG
GCTTGTCCGTGCCCCACGATTGCAAGCTTGGTGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGCGGCGCCGTCGATCAGAGCGAAGGAATGCTCAGCGATGATGTTGTG
GAGCGCGGCTATGCGCTTCTCTGTGTGGCTTATCCCCGCTCCGACTGCCACATTAAGACCATCCCTGAGGAGGAGTTACTGGCCCTTCAATTAGCCACAGCTAATGAC
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTCTTCATTTTGTTCCATCCGCTTTCTCTCCACTAAAACAAAAGCAACCCACAAAGCTTTCCTCTGTTTTCAAGCTCAGACCCACAACCCAGATCGGCTTACG
GCGGCGGTTGCTCGTTCGATCGTACAAAGTGGTGATTGAGCACGAGGGGCAGAGCACCGAGCTGGAGGTTGAAGACGACGAGAGCATATTGAGCAGCGCATTGGATTCTG
GCTTGTCCGTGCCCCACGATTGCAAGCTTGGTGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGCGGCGCCGTCGATCAGAGCGAAGGAATGCTCAGCGATGATGTTGTG
GAGCGCGGCTATGCGCTTCTCTGTGTGGCTTATCCCCGCTCCGACTGCCACATTAAGACCATCCCTGAGGAGGAGTTACTGGCCCTTCAATTAGCCACAGCTAATGAC
Protein sequenceShow/hide protein sequence
MATLHFVPSAFSPLKQKQPTKLSSVFKLRPTTQIGLRRRLLVRSYKVVIEHEGQSTELEVEDDESILSSALDSGLSVPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVV
ERGYALLCVAYPRSDCHIKTIPEEELLALQLATAND