CuGenDBv2

Gene ID	MS005994
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal L18p/L5e family protein
Genome location	scaffold254:3005784..3006048
RNA-Seq Expression	MS005994
Synteny	MS005994
Gene Ontology terms	GO:0043229 - intracellular organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008459355.1 PREDICTED: uncharacterized protein LOC103498514 [Cucumis melo]

1.0e-14

55.88

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Query:  NGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDLT
        +G VKL E +KNK+ I ERE+ +VEKKLRTPTFN +        CL +         C+ + VTS+ VVAV HSISKD+K  LTSRKDSSACAAVG  L 
Subjt:  NGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDLT

Query:  QR
        QR
Subjt:  QR

XP_011656005.1 uncharacterized protein LOC101213193 [Cucumis sativus]

2.6e-15

56.31

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Query:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL
        A+G VKL E +KNK+ I ERE+ +VEKKLRTPTFN +        CL +         C+ + VTS+ VVAV HSISKD+K  LTSRKDSSACAAVG  L
Subjt:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL

Query:  TQR
         QR
Subjt:  TQR

XP_022138029.1 uncharacterized protein LOC111009286 [Momordica charantia]

1.5e-15

56.31

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Query:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL
        A+G+VKL E VKNK+ I ER++ +VEKKLRTPTFN +        CL +         C+ + VTS+ VVAV HSISKD+K  LTSRKDSSACAAVG  L
Subjt:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL

Query:  TQR
         QR
Subjt:  TQR

XP_022973751.1 uncharacterized protein LOC111472322 [Cucurbita maxima]

4.1e-16

57.28

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Query:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL
        A+GHVKL E VKNK+ I ERE+++ EKKLRTPTFN +        CL +         C+ + VTS+ VVAV HSISKD+K  LTSRKDSSACAAVG  L
Subjt:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL

Query:  TQR
         QR
Subjt:  TQR

XP_038896573.1 uncharacterized protein LOC120084825 [Benincasa hispida]

9.1e-16

57.28

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Query:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL
        ANGHVKL E VKNK+ I ERE  +VEKKLRTPTFN +        CL +         C+ + VTS+ VVAV HSIS D+K  LTSRKDSSAC AVG  L
Subjt:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL

Query:  TQR
         QR
Subjt:  TQR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSG6 Uncharacterized protein

1.3e-15

56.31

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Query:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL
        A+G VKL E +KNK+ I ERE+ +VEKKLRTPTFN +        CL +         C+ + VTS+ VVAV HSISKD+K  LTSRKDSSACAAVG  L
Subjt:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL

Query:  TQR
         QR
Subjt:  TQR

A0A1S3CAH6 uncharacterized protein LOC103498514

4.9e-15

55.88

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Query:  NGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDLT
        +G VKL E +KNK+ I ERE+ +VEKKLRTPTFN +        CL +         C+ + VTS+ VVAV HSISKD+K  LTSRKDSSACAAVG  L 
Subjt:  NGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDLT

Query:  QR
        QR
Subjt:  QR

A0A6J1C8X9 uncharacterized protein LOC111009286

7.5e-16

56.31

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Query:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL
        A+G+VKL E VKNK+ I ER++ +VEKKLRTPTFN +        CL +         C+ + VTS+ VVAV HSISKD+K  LTSRKDSSACAAVG  L
Subjt:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL

Query:  TQR
         QR
Subjt:  TQR

A0A6J1F7N1 uncharacterized protein LOC111441610 isoform X1

6.3e-15

56.73

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Query:  ANGHVKLLERVKNKHGIREREDSN-VEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVD
        A+GHVKL E VKNK+ I ERE++N  EKKLRTPTFN +        CL +         C+ +  TS+ VVAV HSISKD+K  LTSRKDSSACAAVG  
Subjt:  ANGHVKLLERVKNKHGIREREDSN-VEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVD

Query:  LTQR
        L QR
Subjt:  LTQR

A0A6J1I8E0 uncharacterized protein LOC111472322

2.0e-16

57.28

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Query:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL
        A+GHVKL E VKNK+ I ERE+++ EKKLRTPTFN +        CL +         C+ + VTS+ VVAV HSISKD+K  LTSRKDSSACAAVG  L
Subjt:  ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIE-------CLGL---------CLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDL

Query:  TQR
         QR
Subjt:  TQR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G22450.1 Ribosomal L18p/L5e family protein

1.4e-06

39.77

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Query:  GIREREDSNVEKKLRTPTFNHI----------------ECLGLCLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDLTQR
        G  +  +  V+K+ RT TFN +                E +  C+ + VTS+ VV V HSISKD+K  L SR++ +ACAAVG  L QR
Subjt:  GIREREDSNVEKKLRTPTFNHI----------------ECLGLCLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDLTQR

Sequences

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CDS sequence

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GCTAATGGCCATGTAAAGCTTCTTGAACGTGTGAAGAACAAACATGGAATACGTGAAAGGGAGGACAGCAATGTTGAGAAGAAGCTCAGGACACCCACATTTAATCATAT
CGAATGCCTCGGTTTGTGCTTGCGTTATTCAGTGACTAGCGAGGTTGTCGTTGCTGTGGAACATTCAATTTCTAAGGACATAAAATTGGTCCTGACTTCAAGGAAGGATT
CCTCTGCCTGTGCTGCTGTGGGAGTTGATTTGACTCAGAGA

mRNA sequence

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Protein sequence

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ANGHVKLLERVKNKHGIREREDSNVEKKLRTPTFNHIECLGLCLRYSVTSEVVVAVEHSISKDIKLVLTSRKDSSACAAVGVDLTQR

MS005994 (gene) of Bitter gourd (TR) v1 genome