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MS005998 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005998
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold254:3018254..3018454
RNA-Seq ExpressionMS005998
SyntenyMS005998
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RYR21794.1 hypothetical protein Ahy_B03g067109 [Arachis hypogaea]8.5e-1456.72Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        LG  +KIN  T +   G FARICVEIDL K+L     VLG  L I+YEG+HL+CF CG +GH+ EDC
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

RYR76834.1 hypothetical protein Ahy_A01g001365 [Arachis hypogaea]3.2e-1350.75Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        +G+T+KI+ NT     G FARICVE+DL K L   F + G  + ++YEG+H +CFHCGC GH +E C
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

XP_019150525.1 PREDICTED: uncharacterized protein LOC109147318 [Ipomoea nil]1.9e-1349.25Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        +GR +KI++ T L   G FAR+CVE D+ K L + F++ G    ++YEGIHLVCF CG +GH+Q++C
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

XP_031096887.1 uncharacterized protein LOC116001136 [Ipomoea triloba]2.2e-1455.22Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        +GR IK++  T L   G FARICVE+D+ K+L + F + GE + I+YEGIH+VCF CG FGHKQ  C
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

XP_031124243.1 uncharacterized protein LOC116026956 [Ipomoea triloba]2.5e-1353.73Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        +GR IK++  T L  +G FAR+CVE+DL K L + F + GE + I+YEGI +VCF CG FGHK+E C
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

TrEMBL top hitse value%identityAlignment
A0A445A5R6 CCHC-type domain-containing protein4.1e-1456.72Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        LG  +KIN  T +   G FARICVEIDL K+L     VLG  L I+YEG+HL+CF CG +GH+ EDC
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

A0A445E0Z0 CCHC-type domain-containing protein4.6e-1352.24Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        LG  +KI+  T +   G FARICV+IDL K+L     VLG  L ++YEG+HL+CF CG +GH+ EDC
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

A0A445EMY8 Uncharacterized protein1.6e-1350.75Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        +G+T+KI+ NT     G FARICVE+DL K L   F + G  + ++YEG+H +CFHCGC GH +E C
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

A0A6P4DDL9 uncharacterized protein LOC1074901946.0e-1349.25Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        +G  +K++ +T +   G FARICVE+DL K+L TSF  LG+   ++YEG+HL+CF+CG +GHK + C
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

U7DV43 CCHC-type domain-containing protein (Fragment)1.2e-1352.24Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        +G+T+K++  T +G  GNFAR+CVE+DL K L   F +      I YEG+HL+CFHCG +GHKQE C
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01050.1 zinc ion binding;nucleic acid binding1.1e-1138.81Show/hide
Query:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC
        LGR +K+++NT   + G FAR+C+E++L K L  + ++ G+R  + YEG+  +C  CG +GH    C
Subjt:  LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGGAAGGACAATTAAAATTAATTTGAATACTCAGCTTGGTGAGATGGGAAATTTTGCTCGTATTTGTGTTGAAATTGATCTTATCAAGCAACTTTGCACAAGTTTTAT
TGTTCTTGGTGAACGTCTTGGAATCCAATATGAAGGTATTCATTTGGTTTGTTTCCACTGTGGATGTTTCGGTCATAAACAGGAAGACTGT
mRNA sequenceShow/hide mRNA sequence
CTTGGAAGGACAATTAAAATTAATTTGAATACTCAGCTTGGTGAGATGGGAAATTTTGCTCGTATTTGTGTTGAAATTGATCTTATCAAGCAACTTTGCACAAGTTTTAT
TGTTCTTGGTGAACGTCTTGGAATCCAATATGAAGGTATTCATTTGGTTTGTTTCCACTGTGGATGTTTCGGTCATAAACAGGAAGACTGT
Protein sequenceShow/hide protein sequence
LGRTIKINLNTQLGEMGNFARICVEIDLIKQLCTSFIVLGERLGIQYEGIHLVCFHCGCFGHKQEDC