; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006017 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006017
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase RHF1A-like
Genome locationscaffold254:3188078..3188598
RNA-Seq ExpressionMS006017
SyntenyMS006017
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1214232.1 E3 ubiquitin-protein ligase RHF1A [Morella rubra]1.3e-2453.91Show/hide
Query:  QRTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANF-FKG
        +R +  ++FSFPE++KSK SA SARYKES S+ TQG K KL+ARN+S+KELSKGVQREM AGIAGV RMI RLDL ++R  +S      T   +NF FKG
Subjt:  QRTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANF-FKG

Query:  MHVRENVSIEAPVLENGNKVHGSSSNAT
          V +NV++++    +G   H  S  AT
Subjt:  MHVRENVSIEAPVLENGNKVHGSSSNAT

KAG8636696.1 hypothetical protein MANES_15G025300v8 [Manihot esculenta]6.4e-2453.03Show/hide
Query:  DIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGMHVRENV
        ++ SF ESIKSK+ A SARYKES S+ T+G+K KL+ARNSS+KELSKGVQREM+AGIAGV RMI RLDL  +R   SS    +   A++  KG  ++EN+
Subjt:  DIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGMHVRENV

Query:  SIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
           AP  ++      +S NA+S  SCT PG +
Subjt:  SIEAPVLENGNKVHGSSSNATSSNSCTKPGSV

XP_021595675.1 E3 ubiquitin-protein ligase RHF1A-like isoform X1 [Manihot esculenta]6.4e-2453.03Show/hide
Query:  DIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGMHVRENV
        ++ SF ESIKSK+ A SARYKES S+ T+G+K KL+ARNSS+KELSKGVQREM+AGIAGV RMI RLDL  +R   SS    +   A++  KG  ++EN+
Subjt:  DIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGMHVRENV

Query:  SIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
           AP  ++      +S NA+S  SCT PG +
Subjt:  SIEAPVLENGNKVHGSSSNATSSNSCTKPGSV

XP_021595677.1 E3 ubiquitin-protein ligase RHF1A-like isoform X3 [Manihot esculenta]6.4e-2453.03Show/hide
Query:  DIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGMHVRENV
        ++ SF ESIKSK+ A SARYKES S+ T+G+K KL+ARNSS+KELSKGVQREM+AGIAGV RMI RLDL  +R   SS    +   A++  KG  ++EN+
Subjt:  DIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGMHVRENV

Query:  SIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
           AP  ++      +S NA+S  SCT PG +
Subjt:  SIEAPVLENGNKVHGSSSNATSSNSCTKPGSV

XP_022138018.1 E3 ubiquitin-protein ligase RHF1A-like [Momordica charantia]1.2e-6599.28Show/hide
Query:  QRTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGM
        QRTNTCDIFSFP+SIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGM
Subjt:  QRTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGM

Query:  HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
        HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
Subjt:  HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV

TrEMBL top hitse value%identityAlignment
A0A061EKL7 RING-H2 group F1A, putative isoform 27.0e-2453.62Show/hide
Query:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAAN-FFKGM
        R ++ + FSF ESIKSK+S  SARYKES S+ T+GLK KL+ARN+S+KELSKGVQREM+AGIAGV +MI RLD+  +R  AS    G T   +N  FKG 
Subjt:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAAN-FFKGM

Query:  HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
         V+ENV  +          HG +S   S +SCT PG V
Subjt:  HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV

A0A061ETE8 RING-H2 group F1A, putative isoform 17.0e-2453.62Show/hide
Query:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAAN-FFKGM
        R ++ + FSF ESIKSK+S  SARYKES S+ T+GLK KL+ARN+S+KELSKGVQREM+AGIAGV +MI RLD+  +R  AS    G T   +N  FKG 
Subjt:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAAN-FFKGM

Query:  HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
         V+ENV  +          HG +S   S +SCT PG V
Subjt:  HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV

A0A2C9UD87 RING-type domain-containing protein3.1e-2453.03Show/hide
Query:  DIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGMHVRENV
        ++ SF ESIKSK+ A SARYKES S+ T+G+K KL+ARNSS+KELSKGVQREM+AGIAGV RMI RLDL  +R   SS    +   A++  KG  ++EN+
Subjt:  DIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGMHVRENV

Query:  SIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
           AP  ++      +S NA+S  SCT PG +
Subjt:  SIEAPVLENGNKVHGSSSNATSSNSCTKPGSV

A0A6A1VMY4 E3 ubiquitin-protein ligase RHF1A6.3e-2553.91Show/hide
Query:  QRTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANF-FKG
        +R +  ++FSFPE++KSK SA SARYKES S+ TQG K KL+ARN+S+KELSKGVQREM AGIAGV RMI RLDL ++R  +S      T   +NF FKG
Subjt:  QRTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANF-FKG

Query:  MHVRENVSIEAPVLENGNKVHGSSSNAT
          V +NV++++    +G   H  S  AT
Subjt:  MHVRENVSIEAPVLENGNKVHGSSSNAT

A0A6J1C8W9 E3 ubiquitin-protein ligase RHF1A-like5.6e-6699.28Show/hide
Query:  QRTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGM
        QRTNTCDIFSFP+SIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGM
Subjt:  QRTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGM

Query:  HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
        HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV
Subjt:  HVRENVSIEAPVLENGNKVHGSSSNATSSNSCTKPGSV

SwissProt top hitse value%identityAlignment
Q4TU14 E3 ubiquitin-protein ligase RHF1A2.4e-2159.6Show/hide
Query:  SFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANF---FKGMHVREN
        S PE+IKSK +A SA+YKES S+  QGLK KL+ARN+S+KELSKGVQREMNAGIAGV RMI R+D  ++R   S+     TA+A+ F   FKG  V  N
Subjt:  SFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANF---FKGMHVREN

Q9ZT42 E3 ubiquitin-protein ligase RHF2A8.5e-1146.43Show/hide
Query:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASST
        R    ++ SF ES+KS+ +A S RYKES S+ T+  K +L +RN+S+ +L   V+RE++AGIA V+RM+ RL+   R NS  ST
Subjt:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASST

Arabidopsis top hitse value%identityAlignment
AT4G14220.1 RING-H2 group F1A1.7e-2259.6Show/hide
Query:  SFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANF---FKGMHVREN
        S PE+IKSK +A SA+YKES S+  QGLK KL+ARN+S+KELSKGVQREMNAGIAGV RMI R+D  ++R   S+     TA+A+ F   FKG  V  N
Subjt:  SFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANF---FKGMHVREN

AT5G22000.1 RING-H2 group F2A6.0e-1246.43Show/hide
Query:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASST
        R    ++ SF ES+KS+ +A S RYKES S+ T+  K +L +RN+S+ +L   V+RE++AGIA V+RM+ RL+   R NS  ST
Subjt:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASST

AT5G22000.2 RING-H2 group F2A6.0e-1246.43Show/hide
Query:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASST
        R    ++ SF ES+KS+ +A S RYKES S+ T+  K +L +RN+S+ +L   V+RE++AGIA V+RM+ RL+   R NS  ST
Subjt:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASST

AT5G22000.3 RING-H2 group F2A6.0e-1246.43Show/hide
Query:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASST
        R    ++ SF ES+KS+ +A S RYKES S+ T+  K +L +RN+S+ +L   V+RE++AGIA V+RM+ RL+   R NS  ST
Subjt:  RTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAAGAACCAACACATGTGACATCTTCTCTTTCCCAGAGTCTATAAAATCGAAATTTTCTGCTACATCAGCCAGATACAAGGAATCATTTTCAAGGTGCACTCAAGGTCT
TAAAGTGAAACTTATTGCTCGCAATAGCTCTTTGAAGGAGCTGAGCAAAGGAGTTCAGCGAGAGATGAATGCTGGGATTGCAGGGGTTACTCGAATGATTGGGCGTCTCG
ATCTTGTTGCAAGACGAAACTCTGCATCAAGTACTGGTCGAGGTATCACAGCCAGTGCAGCAAATTTTTTCAAGGGAATGCATGTGAGAGAGAATGTTAGTATCGAAGCA
CCAGTTCTAGAAAATGGAAACAAAGTGCATGGTTCAAGTTCGAATGCAACCTCAAGCAACTCCTGTACCAAGCCAGGATCTGTA
mRNA sequenceShow/hide mRNA sequence
CAAAGAACCAACACATGTGACATCTTCTCTTTCCCAGAGTCTATAAAATCGAAATTTTCTGCTACATCAGCCAGATACAAGGAATCATTTTCAAGGTGCACTCAAGGTCT
TAAAGTGAAACTTATTGCTCGCAATAGCTCTTTGAAGGAGCTGAGCAAAGGAGTTCAGCGAGAGATGAATGCTGGGATTGCAGGGGTTACTCGAATGATTGGGCGTCTCG
ATCTTGTTGCAAGACGAAACTCTGCATCAAGTACTGGTCGAGGTATCACAGCCAGTGCAGCAAATTTTTTCAAGGGAATGCATGTGAGAGAGAATGTTAGTATCGAAGCA
CCAGTTCTAGAAAATGGAAACAAAGTGCATGGTTCAAGTTCGAATGCAACCTCAAGCAACTCCTGTACCAAGCCAGGATCTGTA
Protein sequenceShow/hide protein sequence
QRTNTCDIFSFPESIKSKFSATSARYKESFSRCTQGLKVKLIARNSSLKELSKGVQREMNAGIAGVTRMIGRLDLVARRNSASSTGRGITASAANFFKGMHVRENVSIEA
PVLENGNKVHGSSSNATSSNSCTKPGSV