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MS006061 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006061
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L33-like
Genome locationscaffold254:3484001..3484171
RNA-Seq ExpressionMS006061
SyntenyMS006061
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0009536 - plastid (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001705 - Ribosomal protein L33
IPR011332 - Zinc-binding ribosomal protein
IPR038584 - Ribosomal protein L33 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575038.1 hypothetical protein SDJN03_25677, partial [Cucurbita argyrosperma subsp. sororia]8.6e-2398.25Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
KAG7013613.1 rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]8.6e-2398.25Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
XP_004135554.1 uncharacterized protein LOC101212288 [Cucumis sativus]8.6e-2398.25Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
XP_007223555.1 uncharacterized protein LOC18791548 [Prunus persica]9.5e-2294.74Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
XP_022137876.1 uncharacterized protein LOC111009198 [Momordica charantia]5.0e-23100Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
TrEMBL top hitse value%identityAlignment
A0A0A0LVW9 Uncharacterized protein4.1e-2398.25Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
A0A6J1C7Z3 uncharacterized protein LOC1110091982.4e-23100Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
A0A6J1CA39 uncharacterized protein LOC1110095994.1e-2398.25Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
A0A6J1H6A1 uncharacterized protein LOC1114599914.1e-2398.25Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
A0A6J1KVU2 uncharacterized protein LOC1114991574.1e-2398.25Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
SwissProt top hitse value%identityAlignment
A8GY80 50S ribosomal protein L334.6e-1162.96Show/hide
Query:  KKKATMFIRLVSAAGTGFFYV-KRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Subjt:  KKKATMFIRLVSAAGTGFFYV-KRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
B3CRY6 50S ribosomal protein L334.6e-1161.11Show/hide
Query:  KKKATMFIRLVSAAGTGFFYVK-RKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        +KK  + ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Subjt:  KKKATMFIRLVSAAGTGFFYVK-RKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
B6IN38 50S ribosomal protein L335.4e-1266.04Show/hide
Query:  KKATMFIRLVSAAGTGFFYVKRK-PTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Subjt:  KKATMFIRLVSAAGTGFFYVKRK-PTKLTEKLEFRKYDPRVNRHVLFTEAKMK
Q1RGQ4 50S ribosomal protein L334.6e-1162.96Show/hide
Query:  KKKATMFIRLVSAAGTGFFYV-KRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Subjt:  KKKATMFIRLVSAAGTGFFYV-KRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
Q2W1A2 50S ribosomal protein L333.2e-1267.92Show/hide
Query:  KKATMFIRLVSAAGTGFFYV-KRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
        K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Subjt:  KKATMFIRLVSAAGTGFFYV-KRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK
Arabidopsis top hitse value%identityAlignment
AT3G06320.1 Ribosomal protein L33 family protein7.7e-2287.93Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-LTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDK+KK  MFIRLVSAAGTGFFYVKRK TK L EKLEFRKYDPRVNRHVLFTE KMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-LTEKLEFRKYDPRVNRHVLFTEAKMK
AT5G18790.1 Ribosomal protein L33 family protein7.7e-2287.93Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-LTEKLEFRKYDPRVNRHVLFTEAKMK
        MGDK+KK  MFIRLVSAAGTGFFYVKRK TK L EKLEFRKYDPRVNRHVLFTE KMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-LTEKLEFRKYDPRVNRHVLFTEAKMK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGACAAGAAGAAGAAGGCTACCATGTTCATCAGACTTGTCTCAGCTGCTGGGACTGGATTTTTCTATGTCAAGAGGAAGCCAACTAAACTAACCGAGAAGCTCGA
GTTCCGGAAGTACGATCCTCGAGTGAACCGTCATGTTCTGTTTACAGAAGCCAAAATGAAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGACAAGAAGAAGAAGGCTACCATGTTCATCAGACTTGTCTCAGCTGCTGGGACTGGATTTTTCTATGTCAAGAGGAAGCCAACTAAACTAACCGAGAAGCTCGA
GTTCCGGAAGTACGATCCTCGAGTGAACCGTCATGTTCTGTTTACAGAAGCCAAAATGAAG
Protein sequenceShow/hide protein sequence
MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK