; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006075 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006075
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA ligase 1-like
Genome locationscaffold254:3588050..3589084
RNA-Seq ExpressionMS006075
SyntenyMS006075
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022948567.1 nucleolar protein 58-like [Cucurbita moschata]5.6e-2348.75Show/hide
Query:  VKAESENKTEPREEKKSD-----CPVKFESENKTEPREEKKS-----DCPVKSESENKTEPREEKK-------SAVKFESEIKTEKQEEKKS-----ECA
        VK E ENKTE +EEK SD       VK ES+NKTE REEKK+     +  VK E ENKTE REEKK       SAVK E E KTE++EEKK+       A
Subjt:  VKAESENKTEPREEKKSD-----CPVKFESENKTEPREEKKS-----DCPVKSESENKTEPREEKK-------SAVKFESEIKTEKQEEKKS-----ECA

Query:  VKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDGN--NGGVVDQGIKPVEEKQSSGETKAEKE--------KDGQ
        VK E E KT+QREEKKS+G  AEVQ V  E AKT            E K+ GDGEKK  N  NGG V        EKQ +GETK EK+        +  Q
Subjt:  VKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDGN--NGGVVDQGIKPVEEKQSSGETKAEKE--------KDGQ

Query:  IIKPVEAKQLAGEATAEKVKEGGANGGG----AEQGIKPVGAKQVAQEQKPEKENGEAVKLKE--EKQSKKEEAAPKLE
         +KP + KQLAGE  AEK KEG  NG       EQ IKPV  K++A+E K  +   EAVK+KE  E QS      P  E
Subjt:  IIKPVEAKQLAGEATAEKVKEGGANGGG----AEQGIKPVGAKQVAQEQKPEKENGEAVKLKE--EKQSKKEEAAPKLE

XP_022955420.1 DNA ligase 1-like [Cucurbita moschata]4.7e-2248.21Show/hide
Query:  KSESENKTE---PREEKKSAVKFESEIKTEKQEEKKSEC-----AVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDG-
        K+ S  KTE     E+   +VK ESE K EK+EEKKS+      AVKFES        E+KSDGVVAEVQN  TE AKTEE KEKEV  DGEKK   DG 
Subjt:  KSESENKTE---PREEKKSAVKFESEIKTEKQEEKKSEC-----AVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDG-

Query:  -----------EKKDGNNGGVVD------QGIKPVEEKQSSGETKAE------KEKDGQI---IKPVEAKQLAGEA---------------TAEKVKEGG
                   EK+      V D      QG KPV E Q +GE + E      K+  G++   IKPVE KQLAG+                T  + KEGG
Subjt:  -----------EKKDGNNGGVVD------QGIKPVEEKQSSGETKAE------KEKDGQI---IKPVEAKQLAGEA---------------TAEKVKEGG

Query:  ANG-GGAEQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE
         NG  G EQ IKPV  KQ+A+E K EK+ GEAVKLKEE Q+KKEE APK+E
Subjt:  ANG-GGAEQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE

XP_022979880.1 enolase-phosphatase E1-like isoform X1 [Cucurbita maxima]8.1e-2247.47Show/hide
Query:  VKSESENKTEP--REEK-KSAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDG
        VK  S  KTE    EEK   +VK ESE  TEK+EEKKS+ A K    +K E   E+KSDGVVAEVQN  TE AKTEE KEKEV  DGEKK     EK+DG
Subjt:  VKSESENKTEP--REEK-KSAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDG

Query:  NNGGVVD---------------------------QGIKPVEEKQSSGETK------AEKEKDG---QIIKPVEAKQLAGEA---------------TAEK
        NNGG ++                           QG KPVEE+Q +GE +       +K+  G   Q+IKPVE K L G+                T  +
Subjt:  NNGGVVD---------------------------QGIKPVEEKQSSGETK------AEKEKDG---QIIKPVEAKQLAGEA---------------TAEK

Query:  VKEGGANGGGA--EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE
          E G NGG A  EQ IKPV  KQ+A+E K EK+ GEAVKLKEE Q+KKEE APK+E
Subjt:  VKEGGANGGGA--EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE

XP_022979881.1 enolase-phosphatase E1-like isoform X2 [Cucurbita maxima]8.1e-2247.47Show/hide
Query:  VKSESENKTEP--REEK-KSAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDG
        VK  S  KTE    EEK   +VK ESE  TEK+EEKKS+ A K    +K E   E+KSDGVVAEVQN  TE AKTEE KEKEV  DGEKK     EK+DG
Subjt:  VKSESENKTEP--REEK-KSAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDG

Query:  NNGGVVD---------------------------QGIKPVEEKQSSGETK------AEKEKDG---QIIKPVEAKQLAGEA---------------TAEK
        NNGG ++                           QG KPVEE+Q +GE +       +K+  G   Q+IKPVE K L G+                T  +
Subjt:  NNGGVVD---------------------------QGIKPVEEKQSSGETK------AEKEKDG---QIIKPVEAKQLAGEA---------------TAEK

Query:  VKEGGANGGGA--EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE
          E G NGG A  EQ IKPV  KQ+A+E K EK+ GEAVKLKEE Q+KKEE APK+E
Subjt:  VKEGGANGGGA--EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE

XP_038902432.1 histone-lysine N-methyltransferase, H3 lysine-79 specific-like [Benincasa hispida]1.9e-2347.83Show/hide
Query:  KAESENKTEPREEKKSDCPV---KFESENKTEPREEKKSDCPVKSESENKTEPREEKK---SAVKFESEIKTEKQEEKKSECAVKFESEIK----TEQRE
        +++S  K+    +  +D  V   K  S+NK    +E+K D  VK ESENK E REEKK    A K +S        EKK   AVK ESE K     +   
Subjt:  KAESENKTEPREEKKSDCPV---KFESENKTEPREEKKSDCPVKSESENKTEPREEKK---SAVKFESEIKTEKQEEKKSECAVKFESEIK----TEQRE

Query:  EKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKK---VAGDGEKKD---GNNGGVVDQGIKPVEEKQSSGETKAEKEKD---GQI-----IKPVEAKQ
        E+K D VVAEVQNV TEG KTEERKEKEV  D EKK     GD EKK+   G+NGG V        EKQ +GETKAEKEK+   G+I     IKPVE K 
Subjt:  EKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKK---VAGDGEKKD---GNNGGVVDQGIKPVEEKQSSGETKAEKEKD---GQI-----IKPVEAKQ

Query:  LAGEA-----------TAEKVKEGGANGGGAEQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEE-AAPKLE
        L GE               + K    +GG  EQ  KP   KQ+A+E K EK+NGEAVKLKEE Q+KKEE AAPK+E
Subjt:  LAGEA-----------TAEKVKEGGANGGGAEQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEE-AAPKLE

TrEMBL top hitse value%identityAlignment
A0A0A0L8Y3 Uncharacterized protein4.9e-1745.38Show/hide
Query:  KSDCPVKSE-SENKTEPREEKK--SAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKK-----
        K D  VK E SENK E R+EKK     K E E+KT    E+K + AVK ES        E+KSD +V       TEG KTEERKEKEVA D EKK     
Subjt:  KSDCPVKSE-SENKTEPREEKK--SAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKK-----

Query:  ---------VAGDGEKK---DGNNGGVVDQGIKPVEEKQSSGETKAEKEKDG------QIIKPVEAKQLAGEATAE------------KVKEGGANGGGA
                 VA   EKK   DG NGG V        EKQ +GETKAE++K+G      Q +K VE K LAGE   E            + K     GG  
Subjt:  ---------VAGDGEKK---DGNNGGVVDQGIKPVEEKQSSGETKAEKEKDG------QIIKPVEAKQLAGEATAE------------KVKEGGANGGGA

Query:  EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEE
        E+GIK    K++A+E K EK+NGEAVKLKEE + KKEE
Subjt:  EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEE

A0A6J1G9L1 nucleolar protein 58-like2.7e-2348.75Show/hide
Query:  VKAESENKTEPREEKKSD-----CPVKFESENKTEPREEKKS-----DCPVKSESENKTEPREEKK-------SAVKFESEIKTEKQEEKKS-----ECA
        VK E ENKTE +EEK SD       VK ES+NKTE REEKK+     +  VK E ENKTE REEKK       SAVK E E KTE++EEKK+       A
Subjt:  VKAESENKTEPREEKKSD-----CPVKFESENKTEPREEKKS-----DCPVKSESENKTEPREEKK-------SAVKFESEIKTEKQEEKKS-----ECA

Query:  VKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDGN--NGGVVDQGIKPVEEKQSSGETKAEKE--------KDGQ
        VK E E KT+QREEKKS+G  AEVQ V  E AKT            E K+ GDGEKK  N  NGG V        EKQ +GETK EK+        +  Q
Subjt:  VKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDGN--NGGVVDQGIKPVEEKQSSGETKAEKE--------KDGQ

Query:  IIKPVEAKQLAGEATAEKVKEGGANGGG----AEQGIKPVGAKQVAQEQKPEKENGEAVKLKE--EKQSKKEEAAPKLE
         +KP + KQLAGE  AEK KEG  NG       EQ IKPV  K++A+E K  +   EAVK+KE  E QS      P  E
Subjt:  IIKPVEAKQLAGEATAEKVKEGGANGGG----AEQGIKPVGAKQVAQEQKPEKENGEAVKLKE--EKQSKKEEAAPKLE

A0A6J1GV33 DNA ligase 1-like2.3e-2248.21Show/hide
Query:  KSESENKTE---PREEKKSAVKFESEIKTEKQEEKKSEC-----AVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDG-
        K+ S  KTE     E+   +VK ESE K EK+EEKKS+      AVKFES        E+KSDGVVAEVQN  TE AKTEE KEKEV  DGEKK   DG 
Subjt:  KSESENKTE---PREEKKSAVKFESEIKTEKQEEKKSEC-----AVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDG-

Query:  -----------EKKDGNNGGVVD------QGIKPVEEKQSSGETKAE------KEKDGQI---IKPVEAKQLAGEA---------------TAEKVKEGG
                   EK+      V D      QG KPV E Q +GE + E      K+  G++   IKPVE KQLAG+                T  + KEGG
Subjt:  -----------EKKDGNNGGVVD------QGIKPVEEKQSSGETKAE------KEKDGQI---IKPVEAKQLAGEA---------------TAEKVKEGG

Query:  ANG-GGAEQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE
         NG  G EQ IKPV  KQ+A+E K EK+ GEAVKLKEE Q+KKEE APK+E
Subjt:  ANG-GGAEQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE

A0A6J1IS09 enolase-phosphatase E1-like isoform X23.9e-2247.47Show/hide
Query:  VKSESENKTEP--REEK-KSAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDG
        VK  S  KTE    EEK   +VK ESE  TEK+EEKKS+ A K    +K E   E+KSDGVVAEVQN  TE AKTEE KEKEV  DGEKK     EK+DG
Subjt:  VKSESENKTEP--REEK-KSAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDG

Query:  NNGGVVD---------------------------QGIKPVEEKQSSGETK------AEKEKDG---QIIKPVEAKQLAGEA---------------TAEK
        NNGG ++                           QG KPVEE+Q +GE +       +K+  G   Q+IKPVE K L G+                T  +
Subjt:  NNGGVVD---------------------------QGIKPVEEKQSSGETK------AEKEKDG---QIIKPVEAKQLAGEA---------------TAEK

Query:  VKEGGANGGGA--EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE
          E G NGG A  EQ IKPV  KQ+A+E K EK+ GEAVKLKEE Q+KKEE APK+E
Subjt:  VKEGGANGGGA--EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE

A0A6J1IUL2 enolase-phosphatase E1-like isoform X13.9e-2247.47Show/hide
Query:  VKSESENKTEP--REEK-KSAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDG
        VK  S  KTE    EEK   +VK ESE  TEK+EEKKS+ A K    +K E   E+KSDGVVAEVQN  TE AKTEE KEKEV  DGEKK     EK+DG
Subjt:  VKSESENKTEP--REEK-KSAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGAKTEERKEKEVANDGEKKVAGDGEKKDG

Query:  NNGGVVD---------------------------QGIKPVEEKQSSGETK------AEKEKDG---QIIKPVEAKQLAGEA---------------TAEK
        NNGG ++                           QG KPVEE+Q +GE +       +K+  G   Q+IKPVE K L G+                T  +
Subjt:  NNGGVVD---------------------------QGIKPVEEKQSSGETK------AEKEKDG---QIIKPVEAKQLAGEA---------------TAEK

Query:  VKEGGANGGGA--EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE
          E G NGG A  EQ IKPV  KQ+A+E K EK+ GEAVKLKEE Q+KKEE APK+E
Subjt:  VKEGGANGGGA--EQGIKPVGAKQVAQEQKPEKENGEAVKLKEEKQSKKEEAAPKLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGAAGGCTGAATCTGAGAACAAAACGGAGCCGCGAGAAGAAAAGAAAAGCGATTGCCCTGTGAAGTTTGAATCTGAGAACAAAACGGAGCCGCGAGAAGAAAAGAAAAG
CGATTGCCCTGTGAAGTCTGAATCTGAGAACAAAACGGAGCCGCGAGAAGAAAAGAAAAGCGCAGTGAAGTTTGAATCTGAGATCAAAACAGAGAAACAAGAGGAAAAGA
AAAGCGAATGCGCAGTGAAGTTTGAATCTGAGATCAAAACAGAGCAACGAGAAGAGAAGAAAAGCGATGGCGTTGTGGCTGAGGTCCAAAATGTGCCGACGGAGGGAGCG
AAAACAGAGGAGAGAAAAGAGAAAGAGGTCGCCAACGACGGCGAGAAGAAGGTCGCCGGCGACGGTGAGAAGAAGGATGGCAACAATGGCGGTGTTGTCGACCAAGGAAT
TAAACCTGTTGAGGAAAAACAATCAAGCGGCGAAACCAAAGCAGAGAAGGAGAAGGATGGACAGATAATCAAACCTGTTGAGGCAAAGCAGTTGGCCGGAGAAGCGACGG
CGGAGAAGGTGAAGGAGGGCGGCGCAAACGGCGGCGGTGCCGAACAGGGAATCAAACCTGTGGGGGCAAAGCAGGTGGCCCAAGAACAAAAACCAGAGAAGGAAAATGGA
GAGGCAGTGAAATTGAAGGAAGAAAAGCAATCCAAGAAAGAAGAGGCAGCTCCAAAGCTTGAA
mRNA sequenceShow/hide mRNA sequence
GTGAAGGCTGAATCTGAGAACAAAACGGAGCCGCGAGAAGAAAAGAAAAGCGATTGCCCTGTGAAGTTTGAATCTGAGAACAAAACGGAGCCGCGAGAAGAAAAGAAAAG
CGATTGCCCTGTGAAGTCTGAATCTGAGAACAAAACGGAGCCGCGAGAAGAAAAGAAAAGCGCAGTGAAGTTTGAATCTGAGATCAAAACAGAGAAACAAGAGGAAAAGA
AAAGCGAATGCGCAGTGAAGTTTGAATCTGAGATCAAAACAGAGCAACGAGAAGAGAAGAAAAGCGATGGCGTTGTGGCTGAGGTCCAAAATGTGCCGACGGAGGGAGCG
AAAACAGAGGAGAGAAAAGAGAAAGAGGTCGCCAACGACGGCGAGAAGAAGGTCGCCGGCGACGGTGAGAAGAAGGATGGCAACAATGGCGGTGTTGTCGACCAAGGAAT
TAAACCTGTTGAGGAAAAACAATCAAGCGGCGAAACCAAAGCAGAGAAGGAGAAGGATGGACAGATAATCAAACCTGTTGAGGCAAAGCAGTTGGCCGGAGAAGCGACGG
CGGAGAAGGTGAAGGAGGGCGGCGCAAACGGCGGCGGTGCCGAACAGGGAATCAAACCTGTGGGGGCAAAGCAGGTGGCCCAAGAACAAAAACCAGAGAAGGAAAATGGA
GAGGCAGTGAAATTGAAGGAAGAAAAGCAATCCAAGAAAGAAGAGGCAGCTCCAAAGCTTGAA
Protein sequenceShow/hide protein sequence
VKAESENKTEPREEKKSDCPVKFESENKTEPREEKKSDCPVKSESENKTEPREEKKSAVKFESEIKTEKQEEKKSECAVKFESEIKTEQREEKKSDGVVAEVQNVPTEGA
KTEERKEKEVANDGEKKVAGDGEKKDGNNGGVVDQGIKPVEEKQSSGETKAEKEKDGQIIKPVEAKQLAGEATAEKVKEGGANGGGAEQGIKPVGAKQVAQEQKPEKENG
EAVKLKEEKQSKKEEAAPKLE