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MS006089 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006089
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60s ribosomal protein l2, mitochondrial
Genome locationscaffold254:3722940..3723108
RNA-Seq ExpressionMS006089
SyntenyMS006089
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA0413922.1 unnamed protein product [Arabidopsis thaliana]2.3e-1789.29Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GN HEAP EREGLPGRMPMGAGFFEKARADSETWDLGLATNE  SSSFLRQ LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
KAG7530625.1 Ribosomal Proteins L2 RNA binding domain [Arabidopsis thaliana x Arabidopsis arenosa]2.3e-1789.29Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GN HEAP EREGLPGRMPMGAGFFEKARADSETWDLGLATNE  SSSFLRQ LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
NP_178797.2 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]2.3e-1789.29Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GN HEAP EREGLPGRMPMGAGFFEKARADSETWDLGLATNE  SSSFLRQ LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
XP_027185391.1 LOW QUALITY PROTEIN: uncharacterized protein LOC113783450 [Coffea eugenioides]1.6e-1892.86Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE SS SFLRQ LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
XP_042504770.1 LOW QUALITY PROTEIN: 60S ribosomal protein L2, mitochondrial [Macadamia integrifolia]5.5e-1994.64Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE SSSSFLRQ LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
TrEMBL top hitse value%identityAlignment
A0A078JSA1 BnaUnng03880D protein (Fragment)3.3e-1789.29Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GN HEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE  SSSFL Q LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
A0A078K1A3 BnaUnng04520D protein (Fragment)3.3e-1789.29Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GN HEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE  SSSFL Q LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
A0A3P6HGQ8 Ribosomal_L2 domain-containing protein3.3e-1789.29Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GN HEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE  SSSFL Q LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
A0A654GF58 Ribosomal_L2 domain-containing protein1.1e-1789.29Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GN HEAP EREGLPGRMPMGAGFFEKARADSETWDLGLATNE  SSSFLRQ LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
F4IMC7 Nucleic acid-binding, OB-fold-like protein1.1e-1789.29Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GN HEAP EREGLPGRMPMGAGFFEKARADSETWDLGLATNE  SSSFLRQ LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G07715.1 Nucleic acid-binding, OB-fold-like protein2.2e-2189.29Show/hide
Query:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM
        E GN HEAP EREGLPGRMPMGAGFFEKARADSETWDLGLATNE  SSSFLRQ LM
Subjt:  ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE-SSSSFLRQWLM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGCTGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGA
CCTTGGCTTAGCAACGAATGAAAGCTCTTCGAGCTTTCTCCGCCAGTGGCTTATG
mRNA sequenceShow/hide mRNA sequence
GAGCTGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGA
CCTTGGCTTAGCAACGAATGAAAGCTCTTCGAGCTTTCTCCGCCAGTGGCTTATG
Protein sequenceShow/hide protein sequence
ELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNESSSSFLRQWLM