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MS006127 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006127
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold96:250271..250876
RNA-Seq ExpressionMS006127
SyntenyMS006127
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056936.1 putative ribonuclease H protein [Cucumis melo var. makuwa]2.2e-8180.54Show/hide
Query:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL
        L ARQ H +   IPVAW RPEIGWTKLNFDGSSKG K+PG  SIGGVLRDH+AQFLLGYAE IGRANSAMAEL+AL KGLELV+ENGWKDVWVEGD KGL
Subjt:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL

Query:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRK
        VEI+ +N+EVKCVE RS FRYI S+ILDLDNC VSH+YREGNKVA  FASIGHRYKKLEIWR++PPL+TL+MMR DAEGKITFR+
Subjt:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRK

KAE8652698.1 hypothetical protein Csa_013405 [Cucumis sativus]1.1e-7777.42Show/hide
Query:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL
        L AR+ H     IPVAWTRPE GWTKLNFDGSSKG+  PG  SIGGVLRDH+AQFLLGYAE IGRA S+MAEL AL KGLELV+ENGWKDVWVEGDAKGL
Subjt:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL

Query:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRKR
        VEI+ ENREVKC+EARS  R+I S++LD DNC VSH+YREGNKVA  FASIGHR KKLEIWR++PPL+TL+MMR DAEGKITFR+R
Subjt:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRKR

KAG5516709.1 hypothetical protein RHGRI_037449 [Rhododendron griersonianum]2.5e-6459.41Show/hide
Query:  SLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVI
        ++ NI+RC     +  R  + R WH E I VAW +PEIGWTKLNFDGS KGK   G+ SIGGV R+H+A+FLLGYAE IGR  S +AEL+AL +GLELV+
Subjt:  SLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVI

Query:  ENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFR
        ENGW+DVW+EGD+K LVEII   + VKC EA+    +IN MI +L+NCM+SHVYREGNK A  FA +GH+ KK ++WR  PP Q L +M  DAEGKI  R
Subjt:  ENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFR

Query:  KR
        KR
Subjt:  KR

KAG6584039.1 putative ribonuclease H protein, partial [Cucurbita argyrosperma subsp. sororia]2.1e-8777.11Show/hide
Query:  SLNNIVRCGPSKINGIRS-LLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELV
        SLN +++C   +IN IR+ LLARQ H + IPVAW RP+IGWTKLNFDGSS+GK SPGR SIGGVLRDH+AQFLLGYAEPIGRANS +AEL+AL KGLELV
Subjt:  SLNNIVRCGPSKINGIRS-LLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELV

Query:  IENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITF
        +ENGWKDVW+EGDAKGL+EIIV  ++ KCVEARS+FRYINS+ILDL+NC VSH+YREGN+VA+ FASIGHRYKKLE+WRDIPPL+TL+MMR+DAEGKI+F
Subjt:  IENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITF

Query:  R
        R
Subjt:  R

XP_038895327.1 uncharacterized protein LOC120083578 [Benincasa hispida]1.5e-7472.14Show/hide
Query:  SLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVI
        +L  I++C   +I  IRS LARQWH + IPVAWTRPEIGWTKLNFDGSSKGKK+PGR SIGGVLRDH+AQFLLGYAEPIGRANS MAEL+AL KGLELV+
Subjt:  SLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVI

Query:  ENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFR
        ENGWKDVWVEGDAKGLVEIIVEN+EVKCVEARS FR                           FASIGHRYKKLEIWR+IPPL+ L+MMRQDAEGKITFR
Subjt:  ENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFR

Query:  K
        +
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A0A0LUF5 RNase H domain-containing protein5.5e-7877.42Show/hide
Query:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL
        L AR+ H     IPVAWTRPE GWTKLNFDGSSKG+  PG  SIGGVLRDH+AQFLLGYAE IGRA S+MAEL AL KGLELV+ENGWKDVWVEGDAKGL
Subjt:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL

Query:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRKR
        VEI+ ENREVKC+EARS  R+I S++LD DNC VSH+YREGNKVA  FASIGHR KKLEIWR++PPL+TL+MMR DAEGKITFR+R
Subjt:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRKR

A0A2N9IF10 RNase H domain-containing protein3.8e-6358.82Show/hide
Query:  SLNNIVRCGPSKI--NGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLEL
        S+ NI+RC    I  N +R  L R WH EAIPV W +PEIGWTKLNFDGSSKG+ +  + SIGGV R+H+A+FLLGYAE IG+ANS +AEL+AL +GLEL
Subjt:  SLNNIVRCGPSKI--NGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLEL

Query:  VIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKIT
        V+ENGW DVW+EGDAK L++IIV+ R VKC+E +     IN ++L+LDN  V+HVYREGN+ A  FA IGH  K   IWR+ PP + L +M++DA+GKI 
Subjt:  VIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKIT

Query:  FRKR
         R+R
Subjt:  FRKR

A0A5D3DS33 Putative ribonuclease H protein1.1e-8180.54Show/hide
Query:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL
        L ARQ H +   IPVAW RPEIGWTKLNFDGSSKG K+PG  SIGGVLRDH+AQFLLGYAE IGRANSAMAEL+AL KGLELV+ENGWKDVWVEGD KGL
Subjt:  LLARQWHNE--AIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL

Query:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRK
        VEI+ +N+EVKCVE RS FRYI S+ILDLDNC VSH+YREGNKVA  FASIGHRYKKLEIWR++PPL+TL+MMR DAEGKITFR+
Subjt:  VEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRK

A0A6A3AS82 RNase H domain-containing protein2.1e-6155.45Show/hide
Query:  SLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVI
        + +N+ RC     N +R LL R WH E IPV+W +PEIGWTKLNFDGS KG+   G+GSIGG++R+H+A+FLLGYAE IGR  S +AELSAL +GLELV+
Subjt:  SLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVI

Query:  ENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFR
        ENGW D+W+EGDA+ L+++IV  R+VKC E +    +IN +I +L+NC+++H+YREGNK A  FA IGH+ +K  IW  IPP + L ++ +DAEGK+  R
Subjt:  ENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFR

Query:  KR
        +R
Subjt:  KR

A0A7N2LU47 RNase H domain-containing protein1.5e-6258.62Show/hide
Query:  SLNNIVRCGPSKINGIR-SLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELV
        S+ NI+RC       I   +L R WH EAIPV W +PE GWTKLNFDGSSKGK +  + SIGGV R+H+A+F+LGYAE IGRANS +AEL+AL +GLELV
Subjt:  SLNNIVRCGPSKINGIR-SLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELV

Query:  IENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITF
        +ENGW DVW+EGDAK L++II + R+VK  E +   R IN +IL+LDNC+V+HVYREGN+ A  FA IGH  +K  IWR++PP + L +M+ DAEGK   
Subjt:  IENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITF

Query:  RKR
        R R
Subjt:  RKR

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.6e-1028.16Show/hide
Query:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAK---GLVEIIVENREVK
        + W  P +GW K+N DG+S+G  +PG  S GGVLRD    +  G++  IGR ++  AEL  +  GL    E     V +E D++   G ++  + +    
Subjt:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAK---GLVEIIVENREVK

Query:  CVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRK
            R    ++    L      + HVYRE N++A   A+            D+ P     ++R+D  G    R+
Subjt:  CVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRK

Arabidopsis top hitse value%identityAlignment
AT1G04625.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.7e-0831.11Show/hide
Query:  WTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIG--RANSAMAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCVE
        WT P IGWTK N+DG+     S      G +LRD    F LG A  IG    N   +EL AL   ++     G++ ++ EGD K + EI+  N       
Subjt:  WTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIG--RANSAMAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCVE

Query:  ARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFA
          +  R I++     + C  +   R  N  A + A
Subjt:  ARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFA

AT1G24090.1 RNase H family protein3.8e-0726.21Show/hide
Query:  LNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMI
        + FDG+SKG  +PG      VL+  +   +    + +G A +  AE  AL  GL+  IE G+K++ V+GD+K           + C++ + +++  + ++
Subjt:  LNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCVEARSRFRYINSMI

Query:  LDL--------DNCM---VSHVYREGNKVAHSFASIGHRYKKLEI
          L        + C+   +SHV R  N  A   A++  R  + E+
Subjt:  LDL--------DNCM---VSHVYREGNKVAHSFASIGHRYKKLEI

AT2G46460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0928.68Show/hide
Query:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFL-LGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCV
        + WTRP  GW K N+DG S  ++ P +   G ++RD   QF+  G A     +N+  +E  AL   ++    +G + +W EGD + ++EI+  NR     
Subjt:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFL-LGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGLVEIIVENREVKCV

Query:  EARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFA
        +  +  R + +       C  + + R+ NK A   A
Subjt:  EARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFA

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.0e-0729.92Show/hide
Query:  LNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL---VEIIVENREVKCVEARSRFRYIN
        + FDG+SKG  +PG+   G VLR  +   L    E +G A + +AE  AL  GL   ++ G+K+V V GD+  +   V+   +    K  E   + + + 
Subjt:  LNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGL---VEIIVENREVKCVEARSRFRYIN

Query:  SMILDLDNCMVSHVYREGNKVAHSFAS
        +     D   + H+ RE N  A   A+
Subjt:  SMILDLDNCMVSHVYREGNKVAHSFAS

AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.3e-1039.08Show/hide
Query:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGLV
        + W  P +GW K+N DG+S+G  +PG  S GGVLRD E  +  G++  IGR ++  AEL  +  GL    E     V +E D++ +V
Subjt:  VAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVEGDAKGLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCACTAAACAACATTGTAAGATGTGGCCCCTCCAAAATTAACGGAATCCGATCATTACTAGCGAGGCAATGGCACAATGAAGCAATTCCAGTTGCGTGGACAAGGCCCGA
AATTGGATGGACAAAGCTGAATTTTGATGGGTCTTCCAAAGGGAAAAAATCACCAGGCAGAGGCAGCATTGGAGGCGTCCTGAGAGACCACGAGGCGCAGTTTCTGCTTG
GATATGCAGAGCCCATCGGGCGAGCCAACAGCGCCATGGCCGAACTCAGTGCCCTCGAAAAAGGGCTGGAATTGGTGATTGAAAATGGGTGGAAAGACGTTTGGGTTGAG
GGAGATGCGAAGGGGTTGGTGGAAATAATAGTTGAAAACAGAGAGGTCAAATGCGTGGAAGCTCGAAGCCGTTTTCGGTACATAAATTCTATGATTCTGGATTTGGATAA
TTGCATGGTTAGTCATGTTTACAGGGAAGGTAATAAAGTTGCCCACAGCTTTGCTTCCATTGGGCATCGCTATAAGAAGCTTGAAATTTGGAGGGACATTCCCCCATTGC
AGACTTTGGAGATGATGCGTCAAGATGCTGAGGGTAAGATTACTTTTAGGAAAAGA
mRNA sequenceShow/hide mRNA sequence
TCACTAAACAACATTGTAAGATGTGGCCCCTCCAAAATTAACGGAATCCGATCATTACTAGCGAGGCAATGGCACAATGAAGCAATTCCAGTTGCGTGGACAAGGCCCGA
AATTGGATGGACAAAGCTGAATTTTGATGGGTCTTCCAAAGGGAAAAAATCACCAGGCAGAGGCAGCATTGGAGGCGTCCTGAGAGACCACGAGGCGCAGTTTCTGCTTG
GATATGCAGAGCCCATCGGGCGAGCCAACAGCGCCATGGCCGAACTCAGTGCCCTCGAAAAAGGGCTGGAATTGGTGATTGAAAATGGGTGGAAAGACGTTTGGGTTGAG
GGAGATGCGAAGGGGTTGGTGGAAATAATAGTTGAAAACAGAGAGGTCAAATGCGTGGAAGCTCGAAGCCGTTTTCGGTACATAAATTCTATGATTCTGGATTTGGATAA
TTGCATGGTTAGTCATGTTTACAGGGAAGGTAATAAAGTTGCCCACAGCTTTGCTTCCATTGGGCATCGCTATAAGAAGCTTGAAATTTGGAGGGACATTCCCCCATTGC
AGACTTTGGAGATGATGCGTCAAGATGCTGAGGGTAAGATTACTTTTAGGAAAAGA
Protein sequenceShow/hide protein sequence
SLNNIVRCGPSKINGIRSLLARQWHNEAIPVAWTRPEIGWTKLNFDGSSKGKKSPGRGSIGGVLRDHEAQFLLGYAEPIGRANSAMAELSALEKGLELVIENGWKDVWVE
GDAKGLVEIIVENREVKCVEARSRFRYINSMILDLDNCMVSHVYREGNKVAHSFASIGHRYKKLEIWRDIPPLQTLEMMRQDAEGKITFRKR