; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006160 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006160
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S acidic ribosomal protein P1-like
Genome locationscaffold96:777639..778026
RNA-Seq ExpressionMS006160
SyntenyMS006160
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032147 - activation of protein kinase activity (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0030295 - protein kinase activator activity (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2623626.1 unnamed protein product [Spirodela intermedia]2.5e-2267.37Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        MS  ELACTYAALILHDD+IS+TAEKI TLVKAA + V+SYWPSLFAKL  KR++DDLILNVGS    AP+++A+++   A+AA   APAPVE+K
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

MBA0801017.1 hypothetical protein [Gossypium harknessii]3.2e-2268.42Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        M+T ELACTYAALILHDD IS+TAEKI TLVKAA L+VESYWPSLFAKL  K N+DDLI +VGS   +AP+++A++S A   AA A APA  EKK
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

XP_022138163.1 60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]1.1e-3598.9Show/hide
Query:  ELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        ELACTYAALILHDDAISVTAEKI TLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
Subjt:  ELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

XP_022138164.1 60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]1.2e-3798.95Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        MSTSELACTYAALILHDDAISVTAEKI TLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

XP_022736496.1 60S acidic ribosomal protein P1-like [Durio zibethinus]4.2e-2267.71Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKV
        M+ SELACTYA+LIL+DD IS+TAEKI TLVKAA + VESYWPSLFAKL  K+NIDDLI NVGS   +AP+++A+S+ A A  A A APA  EKKV
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKV

TrEMBL top hitse value%identityAlignment
A0A6J1C9A3 60S acidic ribosomal protein P1-like isoform X25.9e-3898.95Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        MSTSELACTYAALILHDDAISVTAEKI TLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

A0A6J1CC92 60S acidic ribosomal protein P1-like isoform X15.6e-3698.9Show/hide
Query:  ELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        ELACTYAALILHDDAISVTAEKI TLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
Subjt:  ELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

A0A6P5Y931 60S acidic ribosomal protein P1-like2.1e-2267.71Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKV
        M+ SELACTYA+LIL+DD IS+TAEKI TLVKAA + VESYWPSLFAKL  K+NIDDLI NVGS   +AP+++A+S+ A A  A A APA  EKKV
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKV

A0A7I8KP78 Hypothetical protein1.2e-2267.37Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        MS  ELACTYAALILHDD+IS+TAEKI TLVKAA + V+SYWPSLFAKL  KR++DDLILNVGS    AP+++A+++   A+AA   APAPVE+K
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

A0A7J9GTV1 Uncharacterized protein1.6e-2268.42Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        M+T ELACTYAALILHDD IS+TAEKI TLVKAA L+VESYWPSLFAKL  K N+DDLI +VGS   +AP+++A++S A   AA A APA  EKK
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

SwissProt top hitse value%identityAlignment
O23095 60S acidic ribosomal protein P1-26.6e-1853.12Show/hide
Query:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        MST  ELAC+YA +IL D+ I++T++KI TLVKAAG+ +ESYWP LFAK++ KRN+ DLI+NVG+        +++++ A A  A A APA  EKK
Subjt:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

P29763 60S acidic ribosomal protein P12.7e-1956.7Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKVP
        MSTSELACTYAALILHDD + +TA+ I T+ KAAG+ VE YWP+LFAKL +K+++DDLI NVG+   +AP   A++ +A  + A   AP   EKK P
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKVP

P52855 60S acidic ribosomal protein P11.9e-2060Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        M++ ELAC YAALIL DD I++TAEKI T+VKAA + VESYWP+LFAKL  KRN++DLIL+VGS   +AP++ A+ +   A+AA   APA  EKK
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

Q8LCW9 60S acidic ribosomal protein P1-14.3e-1752.04Show/hide
Query:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKVP
        MST  ELAC+YA +IL D+ I++TA+KI TLVKAAG+++ESYWP LFAK++ KRN+ DLI+NVG+         A++ +A   AA APA    +K  P
Subjt:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKVP

Q8LEQ0 60S acidic ribosomal protein P1-35.0e-1853.54Show/hide
Query:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS-AAASAPLSMASSSSADASAAPAPAPAPVEKKVP
        MST  ELAC+YA +IL D+ I++TA+KI TLVKAAG+T+ESYWP LFAK++ KRN+ DLI+NVG+     AP++ A+ ++   +AA APA    +K  P
Subjt:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS-AAASAPLSMASSSSADASAAPAPAPAPVEKKVP

Arabidopsis top hitse value%identityAlignment
AT4G00810.1 60S acidic ribosomal protein family4.7e-1953.12Show/hide
Query:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        MST  ELAC+YA +IL D+ I++T++KI TLVKAAG+ +ESYWP LFAK++ KRN+ DLI+NVG+        +++++ A A  A A APA  EKK
Subjt:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

AT4G00810.2 60S acidic ribosomal protein family4.7e-1953.12Show/hide
Query:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK
        MST  ELAC+YA +IL D+ I++T++KI TLVKAAG+ +ESYWP LFAK++ KRN+ DLI+NVG+        +++++ A A  A A APA  EKK
Subjt:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKK

AT5G24510.1 60S acidic ribosomal protein family3.2e-2059.77Show/hide
Query:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS--AAASAPLSMASSSSADASAAP
        MSTSELACTYAALILHDD I +TAE I  LVK A + VESYWPSLFAKL  K+NIDDLI+NVG+     + P++ A+ +++ + + P
Subjt:  MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS--AAASAPLSMASSSSADASAAP

AT5G47700.1 60S acidic ribosomal protein family3.6e-1953.54Show/hide
Query:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS-AAASAPLSMASSSSADASAAPAPAPAPVEKKVP
        MST  ELAC+YA +IL D+ I++TA+KI TLVKAAG+T+ESYWP LFAK++ KRN+ DLI+NVG+     AP++ A+ ++   +AA APA    +K  P
Subjt:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS-AAASAPLSMASSSSADASAAPAPAPAPVEKKVP

AT5G47700.2 60S acidic ribosomal protein family3.6e-1953.54Show/hide
Query:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS-AAASAPLSMASSSSADASAAPAPAPAPVEKKVP
        MST  ELAC+YA +IL D+ I++TA+KI TLVKAAG+T+ESYWP LFAK++ KRN+ DLI+NVG+     AP++ A+ ++   +AA APA    +K  P
Subjt:  MST-SELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS-AAASAPLSMASSSSADASAAPAPAPAPVEKKVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACCAGTGAACTCGCTTGCACCTACGCTGCGTTGATTCTTCACGACGACGCCATCTCCGTCACTGCGGAGAAGATTGTGACATTGGTTAAGGCTGCTGGCCTGAC
CGTGGAATCATACTGGCCCTCTCTGTTCGCTAAGTTGTCGTCAAAAAGGAACATCGACGATCTCATTCTCAACGTCGGATCTGCTGCTGCTTCTGCTCCTCTGTCCATGG
CATCTTCCAGTTCCGCCGATGCCTCTGCCGCTCCCGCTCCTGCTCCTGCGCCCGTCGAGAAGAAGGTACCG
mRNA sequenceShow/hide mRNA sequence
ATGTCGACCAGTGAACTCGCTTGCACCTACGCTGCGTTGATTCTTCACGACGACGCCATCTCCGTCACTGCGGAGAAGATTGTGACATTGGTTAAGGCTGCTGGCCTGAC
CGTGGAATCATACTGGCCCTCTCTGTTCGCTAAGTTGTCGTCAAAAAGGAACATCGACGATCTCATTCTCAACGTCGGATCTGCTGCTGCTTCTGCTCCTCTGTCCATGG
CATCTTCCAGTTCCGCCGATGCCTCTGCCGCTCCCGCTCCTGCTCCTGCGCCCGTCGAGAAGAAGGTACCG
Protein sequenceShow/hide protein sequence
MSTSELACTYAALILHDDAISVTAEKIVTLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKVP