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MS006162 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006162
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPre-mRNA-splicing factor SF2
Genome locationscaffold96:785285..785587
RNA-Seq ExpressionMS006162
SyntenyMS006162
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042513.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]2.1e-3286.42Show/hide
Query:  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALL
        MSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE LGANEQW+CGA LTSRIALL
Subjt:  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALL

KGN49818.1 hypothetical protein Csa_000599 [Cucumis sativus]9.5e-4185.15Show/hide
Query:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFW
        MTSA TNMSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE LGANEQW+CGA LTSRIALLVCFIV+ SALF 
Subjt:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFW

Query:  E
        E
Subjt:  E

PON71975.1 hypothetical protein PanWU01x14_068170, partial [Parasponia andersonii]2.5e-1755.45Show/hide
Query:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALF
        MTSAWTNMSIA+I RDIER+WE  CGVMG+IFL  +  + S+++ T AKILERMRR K      L   +L      + GA LT RIALLVCF+V     F
Subjt:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALF

Query:  W
        W
Subjt:  W

PON83659.1 hypothetical protein TorRG33x02_204650, partial [Trema orientale]7.8e-1956.44Show/hide
Query:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALF
        M SAWTNMSIA+I RDIER+WE  CGVMG+IFL  +  + S+++ T AKILERMRR K      L   +L      +CGA LTSRIALLVCF+V     F
Subjt:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALF

Query:  W
        W
Subjt:  W

TYK05915.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]2.1e-3286.42Show/hide
Query:  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALL
        MSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE LGANEQW+CGA LTSRIALL
Subjt:  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALL

TrEMBL top hitse value%identityAlignment
A0A0A0KJQ0 Uncharacterized protein4.6e-4185.15Show/hide
Query:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFW
        MTSA TNMSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE LGANEQW+CGA LTSRIALLVCFIV+ SALF 
Subjt:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFW

Query:  E
        E
Subjt:  E

A0A2P5DF99 Uncharacterized protein (Fragment)1.2e-1755.45Show/hide
Query:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALF
        MTSAWTNMSIA+I RDIER+WE  CGVMG+IFL  +  + S+++ T AKILERMRR K      L   +L      + GA LT RIALLVCF+V     F
Subjt:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALF

Query:  W
        W
Subjt:  W

A0A2P5EDP3 Uncharacterized protein (Fragment)3.8e-1956.44Show/hide
Query:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALF
        M SAWTNMSIA+I RDIER+WE  CGVMG+IFL  +  + S+++ T AKILERMRR K      L   +L      +CGA LTSRIALLVCF+V     F
Subjt:  MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALF

Query:  W
        W
Subjt:  W

A0A5A7TGZ1 Pre-mRNA-splicing factor SF21.0e-3286.42Show/hide
Query:  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALL
        MSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE LGANEQW+CGA LTSRIALL
Subjt:  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALL

A0A5D3C3G3 Pre-mRNA-splicing factor SF21.0e-3286.42Show/hide
Query:  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALL
        MSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE LGANEQW+CGA LTSRIALL
Subjt:  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACGTAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTATGGGTATTATTTTTTTAAATGGAGATTC
TTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTAGATTACCTTTGGAGCTTCTTGGAGCAAATGAGC
AATGGAGTTGTGGAGCAGGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGGGAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACGTAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTATGGGTATTATTTTTTTAAATGGAGATTC
TTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTAGATTACCTTTGGAGCTTCTTGGAGCAAATGAGC
AATGGAGTTGTGGAGCAGGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGGGAG
Protein sequenceShow/hide protein sequence
MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFWE