; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006170 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006170
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUbiquitin
Genome locationscaffold96:853713..855737
RNA-Seq ExpressionMS006170
SyntenyMS006170
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0019941 - modification-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0031386 - protein tag (molecular function)
GO:0031625 - ubiquitin protein ligase binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR038587 - Ribosomal protein L40e superfamily
IPR029071 - Ubiquitin-like domain superfamily
IPR019956 - Ubiquitin domain
IPR000626 - Ubiquitin-like domain
IPR001975 - Ribosomal protein L40e
IPR011332 - Zinc-binding ribosomal protein
IPR019954 - Ubiquitin conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF2095249.1 unnamed protein product [Brassica napus]1.2e-6196.88Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKGIILIS
        ARLHPRAVNCRKKKCGHSNQV   +LIS
Subjt:  ARLHPRAVNCRKKKCGHSNQVKGIILIS

KAA8516754.1 hypothetical protein F0562_017048 [Nyssa sinensis]1.6e-6195.28Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKGIILI
        ARLHPRAVNCRKKKCGHSNQV  ++++
Subjt:  ARLHPRAVNCRKKKCGHSNQVKGIILI

KAF9601361.1 hypothetical protein IFM89_019093 [Coptis chinensis]8.0e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

KAG4393946.1 hypothetical protein GLYMA_03G197600v4 [Glycine max]2.7e-6195.28Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKGIILI
        ARLHPRAVNCRKKKCGHSNQV+  +++
Subjt:  ARLHPRAVNCRKKKCGHSNQVKGIILI

KAG4396494.1 hypothetical protein GLYMA_19G195500v4 [Glycine max]8.0e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

TrEMBL top hitse value%identityAlignment
A0A2G5CUA0 Ubiquitin3.9e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

A0A4D8YPT6 Ubiquitin3.9e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

A0A5J4ZFZ4 Ubiquitin7.8e-6295.28Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVKGIILI
        ARLHPRAVNCRKKKCGHSNQV  ++++
Subjt:  ARLHPRAVNCRKKKCGHSNQVKGIILI

I1KAY5 Ubiquitin3.9e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

V4SRQ5 Ubiquitin3.9e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

SwissProt top hitse value%identityAlignment
B9DHA6 Ubiquitin-60S ribosomal protein L40-15.2e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

P0CH34 Ubiquitin-60S ribosomal protein L40-15.2e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

P0CH35 Ubiquitin-60S ribosomal protein L40-25.2e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

P49636 Ubiquitin-60S ribosomal protein L403.0e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCR+KKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

Q42202 Ubiquitin-60S ribosomal protein L40-25.2e-6397.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

Arabidopsis top hitse value%identityAlignment
AT1G65350.1 ubiquitin 131.1e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT2G36170.1 Ubiquitin supergroup;Ribosomal protein L40e3.7e-6497.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

AT3G52590.1 ubiquitin extension protein 13.7e-6497.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVK
        ARLHPRAVNCRKKKCGHSNQ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVK

AT4G02890.1 Ubiquitin family protein1.1e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT4G05320.2 polyubiquitin 101.1e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTTGAGTCCAGCGACACCATTGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGTATTCC
CCCCGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTCGCCGACTACAACATTCAGAAAGAATCAACACTACATCTGGTTCTGAGGCTTC
GTGGTGGGATTATTGAGCCTTCTTTGATGGCATTGGCCAGGAAATATAACCAGGACAAGATGATCTGTCGCAAATGTTATGCACGCCTACATCCCCGTGCTGTCAACTGC
CGGAAAAAGAAATGTGGACACAGTAATCAGGTAAAGGGTATTATATTAATTAGT
mRNA sequenceShow/hide mRNA sequence
ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTTGAGTCCAGCGACACCATTGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGTATTCC
CCCCGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTCGCCGACTACAACATTCAGAAAGAATCAACACTACATCTGGTTCTGAGGCTTC
GTGGTGGGATTATTGAGCCTTCTTTGATGGCATTGGCCAGGAAATATAACCAGGACAAGATGATCTGTCGCAAATGTTATGCACGCCTACATCCCCGTGCTGTCAACTGC
CGGAAAAAGAAATGTGGACACAGTAATCAGGTAAAGGGTATTATATTAATTAGT
Protein sequenceShow/hide protein sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNC
RKKKCGHSNQVKGIILIS