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MS006220 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006220
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase reverse transcriptase family protein
Genome locationscaffold96:1282870..1283025
RNA-Seq ExpressionMS006220
SyntenyMS006220
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_013654036.2 uncharacterized protein LOC106358780 [Brassica napus]3.8e-0962.75Show/hide
Query:  LKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
        LK RYFP+G+FL A L   PSF W SIL+GR LL +GLRL VGNG SI ++
Subjt:  LKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
XP_013709208.1 uncharacterized protein LOC106412876 [Brassica napus]3.8e-0962.75Show/hide
Query:  LKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
        LK RYFP+G+FL A L   PSF W SIL+GR LL +GLRL VGNG SI ++
Subjt:  LKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.7e-0957.69Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
        VLKGRYF   +F++A +  +PS+IW SILWGR LL++GLR ++GNG+S+ IY
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
XP_024043257.1 uncharacterized protein LOC112099952 [Citrus clementina]2.9e-0953.85Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
        VLK RYF HG  ++A L   PSFIW S+LWGR ++Q+G R ++GNGE++ +Y
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
XP_030479464.1 uncharacterized protein LOC115696715 [Cannabis sativa]4.9e-0963.27Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESI
        VLK +YF H TFLDA L  +PSF W S+LWGR LL++GL  +VGNGE+I
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESI
TrEMBL top hitse value%identityAlignment
A0A1S8ABR9 RNA-directed DNA polymerase reverse transcriptase family protein (Fragment)8.2e-1055.77Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
        +LK +YF H +F+DA L   PSF+W SILWGR +L +GLR ++GNG  I IY
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
A0A6J1DAR4 uncharacterized protein LOC1110189548.2e-1057.69Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
        VLKGRYF   +F++A +  +PS+IW SILWGR LL++GLR ++GNG+S+ IY
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
A0A6P5S4Z4 uncharacterized protein LOC1107522636.9e-0957.69Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
        + + RYFP GT LDA +   PSF+W S+LWGR LL  GLR +VGNG  I IY
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY
A0A803QCJ0 Uncharacterized protein6.9e-0963.27Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESI
        VLK +YF H TFLDA    SPSF W SI+WGR LL++GL  +VGNGE+I
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESI
A0A803QE78 Uncharacterized protein2.4e-0963.27Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESI
        VLK +YF H TFLDA L  +PSF W S+LWGR LL++GL  +VGNGE+I
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESI
SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003104.0e-0643.48Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNG
        +L+ RYFPH + ++  +   PS+ W SI+ GR LL RGL   +G+G
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNG
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.3e-0440Show/hide
Query:  LKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPI
        +K RYF   + LDA +    S+ W S+L G  LL++G R  +G+G++I I
Subjt:  LKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPI
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.9e-0743.48Show/hide
Query:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNG
        +L+ RYFPH + ++  +   PS+ W SI+ GR LL RGL   +G+G
Subjt:  VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTTGAAAGGTCGGTATTTTCCTCATGGCACTTTTCTGGATGCATGCCTCGATTGGTCCCCCTCGTTTATCTGGTGGAGTATTCTCTGGGGGCGGGTTCTTCTACAGCG
GGGTCTTCGTTTGCAGGTCGGTAATGGGGAGTCGATTCCGATTTAT
mRNA sequenceShow/hide mRNA sequence
GTGTTGAAAGGTCGGTATTTTCCTCATGGCACTTTTCTGGATGCATGCCTCGATTGGTCCCCCTCGTTTATCTGGTGGAGTATTCTCTGGGGGCGGGTTCTTCTACAGCG
GGGTCTTCGTTTGCAGGTCGGTAATGGGGAGTCGATTCCGATTTAT
Protein sequenceShow/hide protein sequence
VLKGRYFPHGTFLDACLDWSPSFIWWSILWGRVLLQRGLRLQVGNGESIPIY