CuGenDBv2

Gene ID	MS006227
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	UBA domain-containing protein
Genome location	scaffold96:1343894..1345869
RNA-Seq Expression	MS006227
Synteny	MS006227
Gene Ontology terms	GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (biological process) GO:0000813 - ESCRT I complex (cellular component) GO:0043130 - ubiquitin binding (molecular function)
InterPro domains	IPR009060 - UBA-like superfamily IPR015940 - Ubiquitin-associated domain IPR038870 - Ubiquitin-associated protein 1 IPR042575 - Ubiquitin-associated protein 1, C-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7035731.1 hypothetical protein SDJN02_02529 [Cucurbita argyrosperma subsp. argyrosperma]

8.9e-103

83.41

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYDYRNKPG+Y++HPPMYGP AS+SPSPS+HPMY  + S+YPRIGQQGHS APPVAR+SSHHHSSS +P SPS PSSSGLGIRVTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG
        PQ+ DIPRSNFQFDFEFEKKVLAEAEKET NW+RFGL++ P++P E +S+MGS GDPVVSKY+ASGL+REAV  AVANYGDNPTKVQEF KGYTLLREMG
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG

Query:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS
        F SNKVVEALLMYDNDTDKAVAHFL GTS
Subjt:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS

XP_022157118.1 uncharacterized protein LOC111023918 isoform X1 [Momordica charantia]

1.3e-117

95.59

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHS APPVARISSHHHS     SSPSPPSSSGLGI VTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG
        PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKP EPTSTMGSLGDPV SKYIASGLNREAV FAVANYGDNPTKVQEFAKGYTLLREMG
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG

Query:  FSSNKVVEALLMYDNDTDKAVAHFLSG
        FSSNKVVEALLMYDNDTDKAVAHFLSG
Subjt:  FSSNKVVEALLMYDNDTDKAVAHFLSG

XP_022157119.1 uncharacterized protein LOC111023918 isoform X2 [Momordica charantia]

1.2e-118

95.63

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHS APPVARISSHHHS     SSPSPPSSSGLGI VTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG
        PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKP EPTSTMGSLGDPV SKYIASGLNREAV FAVANYGDNPTKVQEFAKGYTLLREMG
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG

Query:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS
        FSSNKVVEALLMYDNDTDKAVAHFLSGTS
Subjt:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS

XP_022958203.1 uncharacterized protein LOC111459499 [Cucurbita moschata]

8.9e-103

83.41

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYDYRNKPG+Y++HPPMYGP AS+SPSPS+HPMY  + S+YPRIGQQGHS APPVAR+SSHHHSSS +P SPS PSSSGLGIRVTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG
        PQ+ DIPRSNFQFDFEFEKKVLAEAEKET NW+RFGL++ P++P E +S+MGS GDPVVSKY+ASGL+REAV  AVANYGDNPTKVQEF KGYTLLREMG
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG

Query:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS
        F SNKVVEALLMYDNDTDKAVAHFL GTS
Subjt:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS

XP_038874870.1 uncharacterized protein LOC120067367 [Benincasa hispida]

6.8e-103

85.65

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYDYRNKPGHYD+HPPMYGP AS+SPSPS HPMY  S S+YPRIGQQ  ST  PVAR+SSHHHSSSPSP SPSP SSSGLGIRVTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAE-PTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREM
        PQI DIPRSNFQFDFEFEKKVLAEAEKET NW+RFGL++LP+KP E  TS+M S+GDPVVSKY+ASGL+REAV FAVANYGDNPTKVQEF KGYTLLREM
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAE-PTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREM

Query:  GFSSNKVVEALLMYDNDTDKAVAHFLSGTS
        GFSS KVVEALLMYDNDTDKAVAHFL GTS
Subjt:  GFSSNKVVEALLMYDNDTDKAVAHFLSGTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KNB8 Uncharacterized protein

4.9e-99

82.53

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYD+RN  GHYDSH PMY   AS+SPSPS HPMY HSM  YPRIGQQ  S+ PPVAR+SSHH+SSSP   SPSP SSSGLGIRVTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG
        PQ+ DIPRSNFQFDFEFEKKVLAEAEKE  NW+RFGL++ P KP E TS+MGS+GDPVVSKY+ASGLNREAV FAVANYGDNPTKVQEF KGYTLLREMG
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG

Query:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS
        FSS KVVEALLMYDNDTDKAVAHFL GTS
Subjt:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS

A0A6J1DSJ8 uncharacterized protein LOC111023918 isoform X1

6.2e-118

95.59

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHS APPVARISSHHHS     SSPSPPSSSGLGI VTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG
        PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKP EPTSTMGSLGDPV SKYIASGLNREAV FAVANYGDNPTKVQEFAKGYTLLREMG
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG

Query:  FSSNKVVEALLMYDNDTDKAVAHFLSG
        FSSNKVVEALLMYDNDTDKAVAHFLSG
Subjt:  FSSNKVVEALLMYDNDTDKAVAHFLSG

A0A6J1DVL2 uncharacterized protein LOC111023918 isoform X2

5.6e-119

95.63

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHS APPVARISSHHHS     SSPSPPSSSGLGI VTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG
        PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKP EPTSTMGSLGDPV SKYIASGLNREAV FAVANYGDNPTKVQEFAKGYTLLREMG
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG

Query:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS
        FSSNKVVEALLMYDNDTDKAVAHFLSGTS
Subjt:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS

A0A6J1H2H7 uncharacterized protein LOC111459499

4.3e-103

83.41

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYDYRNKPG+Y++HPPMYGP AS+SPSPS+HPMY  + S+YPRIGQQGHS APPVAR+SSHHHSSS +P SPS PSSSGLGIRVTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG
        PQ+ DIPRSNFQFDFEFEKKVLAEAEKET NW+RFGL++ P++P E +S+MGS GDPVVSKY+ASGL+REAV  AVANYGDNPTKVQEF KGYTLLREMG
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG

Query:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS
        F SNKVVEALLMYDNDTDKAVAHFL GTS
Subjt:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS

A0A6J1K3U0 velvet complex subunit B

3.6e-102

82.53

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS
        MAYDYRNKPG+Y++HPPMYGP AS+SPSPS+HPMY  + S+YPRIGQQGHS APPV R+SSHHHSSS +P SPS PSSSGLGIRVTIKPEYRITPPPQLS
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLS

Query:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG
        PQ+ DIPRSNFQFDFEFEKKVLAEAEKET NW+RFGL++ P++P E +S+MGS GDPVV+KY+ASGL+REAV  AVANYGDNPTKVQEF KGYTLLREMG
Subjt:  PQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMG

Query:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS
        F SNKVVEALLMYDNDTDKAVAHFL GTS
Subjt:  FSSNKVVEALLMYDNDTDKAVAHFLSGTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G53330.1 Ubiquitin-associated/translation elongation factor EF1B protein

2.1e-65

60.17

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Query:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSL-HPMYGHSMSLYPRIGQQ---GHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPP
        M YDYRNK G      PMYGPP S SPSPS  HPMYG     YP+IGQQ   G     P  R SS  H++SP         SSG+GIRV +KPEYRITPP
Subjt:  MAYDYRNKPGHYDSHPPMYGPPASASPSPSL-HPMYGHSMSLYPRIGQQ---GHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPP

Query:  PQLSPQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPT-STMGSLG--DPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGY
        PQL P++ DI RS+FQFDF  E+KVLAEAEK+  +WS+FG +N PAK  EP+ S++G +   D VV KY ASGLNREAV  AVANYGDNPTKVQEFA G+
Subjt:  PQLSPQIRDIPRSNFQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPT-STMGSLG--DPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGY

Query:  TLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS
        T +REMGF +N V +AL M++NDTDKA+AH L G+S
Subjt:  TLLREMGFSSNKVVEALLMYDNDTDKAVAHFLSGTS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTTACGATTACAGAAACAAGCCCGGCCACTACGATTCTCACCCGCCGATGTACGGCCCGCCGGCTTCCGCCTCCCCATCGCCGTCGCTTCATCCAATGTATGGTCA
CTCTATGTCTTTGTATCCGAGGATCGGTCAACAAGGTCATTCGACGGCGCCTCCGGTGGCCCGAATCTCCTCCCACCACCATTCTTCTTCTCCCTCTCCTTCTTCTCCTT
CACCTCCATCTTCTTCAGGATTGGGCATCAGGGTTACAATCAAGCCGGAATATCGAATTACTCCGCCGCCTCAATTATCGCCACAAATTAGAGATATTCCTCGGAGCAAT
TTCCAATTTGATTTTGAGTTTGAGAAGAAGGTTTTAGCTGAAGCAGAGAAAGAAACACAGAATTGGAGTCGGTTTGGGTTGGACAATCTTCCTGCTAAACCAGCAGAACC
GACATCTACAATGGGCTCTCTTGGAGATCCAGTTGTGAGCAAGTATATTGCATCTGGCTTGAATCGGGAAGCTGTACCGTTTGCAGTTGCTAATTATGGAGACAATCCAA
CCAAGGTTCAAGAATTCGCGAAAGGCTACACACTCCTACGAGAAATGGGATTCTCATCGAATAAGGTGGTCGAGGCATTACTCATGTACGACAACGATACCGATAAGGCT
GTAGCTCATTTTCTCAGCGGTACGTCT

mRNA sequence

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Protein sequence

Show/hide protein sequence

MAYDYRNKPGHYDSHPPMYGPPASASPSPSLHPMYGHSMSLYPRIGQQGHSTAPPVARISSHHHSSSPSPSSPSPPSSSGLGIRVTIKPEYRITPPPQLSPQIRDIPRSN
FQFDFEFEKKVLAEAEKETQNWSRFGLDNLPAKPAEPTSTMGSLGDPVVSKYIASGLNREAVPFAVANYGDNPTKVQEFAKGYTLLREMGFSSNKVVEALLMYDNDTDKA
VAHFLSGTS

MS006227 (gene) of Bitter gourd (TR) v1 genome