CuGenDBv2

Gene ID	MS006255
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DET1- and DDB1-associated protein 1
Genome location	scaffold96:1602403..1604989
RNA-Seq Expression	MS006255
Synteny	MS006255
Gene Ontology terms	GO:0009788 - negative regulation of abscisic acid-activated signaling pathway (biological process) GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0080008 - Cul4-RING E3 ubiquitin ligase complex (cellular component)
InterPro domains	IPR018276 - DET1- and DDB1-associated protein 1, N-terminal IPR033575 - DET1- and DDB1-associated protein 1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004143885.1 DET1- and DDB1-associated protein 1 isoform X1 [Cucumis sativus]

5.0e-47

97.96

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHT EKSRTKRPAAEHP+PEHGSKQPRASTTNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

XP_008437336.1 PREDICTED: DET1- and DDB1-associated protein 1 isoform X2 [Cucumis melo]

4.7e-45

96.94

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS MIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHT EKSRTKRPAAEHP+PEHGSKQPRASTTNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

XP_022157123.1 DET1- and DDB1-associated protein 1 isoform X1 [Momordica charantia]

2.7e-48

100

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

XP_022157124.1 DET1- and DDB1-associated protein 1 isoform X2 [Momordica charantia]

2.5e-46

98.98

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS MIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

XP_038906812.1 DET1- and DDB1-associated protein 1 isoform X1 [Benincasa hispida]

1.9e-46

96.94

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHT EKSRTKRPAAEHP PEHGSKQPRAS+TNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KKG6 DET1- and DDB1-associated protein 1

2.4e-47

97.96

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHT EKSRTKRPAAEHP+PEHGSKQPRASTTNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

A0A1S3ATF9 DET1- and DDB1-associated protein 1

2.3e-45

96.94

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS MIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHT EKSRTKRPAAEHP+PEHGSKQPRASTTNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

A0A1S3AUC0 DET1- and DDB1-associated protein 1

2.4e-47

97.96

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHT EKSRTKRPAAEHP+PEHGSKQPRASTTNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

A0A6J1DSK3 DET1- and DDB1-associated protein 1

1.3e-48

100

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

A0A6J1DVL7 DET1- and DDB1-associated protein 1

1.2e-46

98.98

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS MIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

SwissProt top hits

e value

%identity

Alignment

Q9FFS4 DET1- and DDB1-associated protein 1

2.6e-30

67.01

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Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTS
        M S+LGDLPS+DPHNFSQ RPSDPS PSKM+P TY PTH+RTLPPPDQVI TE KNILIR  YQ   EK R KRPA +H   EH +K  RA+++++S
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTS

Arabidopsis top hits

e value

%identity

Alignment

AT5G41560.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

1.9e-31

67.01

Show/hide

Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTS
        M S+LGDLPS+DPHNFSQ RPSDPS PSKM+P TY PTH+RTLPPPDQVI TE KNILIR  YQ   EK R KRPA +H   EH +K  RA+++++S
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTS

Sequences

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CDS sequence

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ATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCATAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTAAGATGATTCCTGCAACCTATCATCC
CACCCACAGTAGGACTCTTCCACCACCAGATCAGGTTATAAATACTGAGGCTAAAAATATACTTATACGACATATTTATCAGCATACAGGAGAAAAGTCAAGGACAAAGA
GACCTGCAGCCGAGCATCCGGTGCCCGAGCACGGAAGCAAGCAACCAAGAGCGTCTACTACCAACACTTCAAAT

mRNA sequence

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Protein sequence

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MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTGEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

MS006255 (gene) of Bitter gourd (TR) v1 genome