; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006261 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006261
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold96:1642203..1642696
RNA-Seq ExpressionMS006261
SyntenyMS006261
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035739.1 hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]3.2e-0632.93Show/hide
Query:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIAC--WFRLFQIFNLQWVFKYSRS-NLHHLLYGP-L
        LFSAI +  SP+  N LIWI++   + ++E+LQKK P + + PS+C +C++ ++     FL   ++   W R+F +FNL W F  S S ++  LL G  L
Subjt:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIAC--WFRLFQIFNLQWVFKYSRS-NLHHLLYGP-L

Query:  PPRSHLIWVNAIEKPLQDLVQDF-KCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV
        P    +IW   + K L  L++ + + N R+  +K          +    +  CS  K FV++S QD+
Subjt:  PPRSHLIWVNAIEKPLQDLVQDF-KCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV

KAA0062564.1 GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]6.2e-1034.81Show/hide
Query:  VLQKKLPNSFLMPSVCLMCVEDAE-VQIICFLVDAIACWFRLFQIFNLQWVFKYS-RSNLHHLLYG-PLPPRSHLIWVNAIEKPLQDLVQDFKCNLRVDE
        V+Q++L NS LMPS C +C+E+ E +Q +     ++ CW  L  +F + W F  S  SN+  +L G  L     LIW N  +  L D+   F+CN R+  
Subjt:  VLQKKLPNSFLMPSVCLMCVEDAE-VQIICFLVDAIACWFRLFQIFNLQWVFKYS-RSNLHHLLYG-PLPPRSHLIWVNAIEKPLQDLVQDFKCNLRVDE

Query:  NKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV
         K   W    DI+    +  C  +K F+D+S QD+
Subjt:  NKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]2.9e-0733.53Show/hide
Query:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIAC--WFRLFQIFNLQWVFKYSRS-NLHHLLYGP-L
        LFSAI +  SP+  N LIWI++   +N++E+LQKK P + + PS+C +C++ ++     FL   ++   W R+F +FNL W F  S S ++  LL G  L
Subjt:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIAC--WFRLFQIFNLQWVFKYSRS-NLHHLLYGP-L

Query:  PPRSHLIWVNAIEKPLQDLVQDF-KCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV
        P    +IW   + K L  L++ + + N R+  +K          +    +  CS  K FV++S QD+
Subjt:  PPRSHLIWVNAIEKPLQDLVQDF-KCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV

XP_022153214.1 uncharacterized protein LOC111020765 [Momordica charantia]4.6e-1335.19Show/hide
Query:  FSAIWKFKSPKLTNFLIWILLT-SLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFL--VDAIACWFRLFQIFNLQWVFKY-SRSNLHHLLYGP--L
        F+A+WK KSP+  N   WIL    LNTA+++QKK P+  L+PS C +C +  E     F     A  CW  LF  FN+ W F   +  N++ LL+GP  L
Subjt:  FSAIWKFKSPKLTNFLIWILLT-SLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFL--VDAIACWFRLFQIFNLQWVFKY-SRSNLHHLLYGP--L

Query:  PPRSHLIWVNAIEKPLQDLVQDFKCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFS
              +W+N ++  L +L   F+ N R+ E K   +   F  + F  S  CS    F+  S
Subjt:  PPRSHLIWVNAIEKPLQDLVQDFKCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFS

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]7.8e-1337.58Show/hide
Query:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIA--CWFRLFQIFNLQWVF-KYSRSNLHHLLYGPLP
        +FS IWK KSP+  N LIWI+L   LN AEVLQKK P   L P+VC  C+  +EV +  F     +  CW +L   FNL        +SN+  LL  P  
Subjt:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIA--CWFRLFQIFNLQWVF-KYSRSNLHHLLYGPLP

Query:  PRS-HLIWVNAIEKPLQDLVQDFKCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQD
         +S  L+W NA++  L DL   F+ N R+  NK        + +    S  C  S  F  +S  D
Subjt:  PRS-HLIWVNAIEKPLQDLVQDFKCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQD

TrEMBL top hitse value%identityAlignment
A0A5A7T2Y0 zf-RVT domain-containing protein1.5e-0632.93Show/hide
Query:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIAC--WFRLFQIFNLQWVFKYSRS-NLHHLLYGP-L
        LFSAI +  SP+  N LIWI++   + ++E+LQKK P + + PS+C +C++ ++     FL   ++   W R+F +FNL W F  S S ++  LL G  L
Subjt:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIAC--WFRLFQIFNLQWVFKYSRS-NLHHLLYGP-L

Query:  PPRSHLIWVNAIEKPLQDLVQDF-KCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV
        P    +IW   + K L  L++ + + N R+  +K          +    +  CS  K FV++S QD+
Subjt:  PPRSHLIWVNAIEKPLQDLVQDF-KCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV

A0A5A7V5N8 GPI-anchor transamidase isoform X13.0e-1034.81Show/hide
Query:  VLQKKLPNSFLMPSVCLMCVEDAE-VQIICFLVDAIACWFRLFQIFNLQWVFKYS-RSNLHHLLYG-PLPPRSHLIWVNAIEKPLQDLVQDFKCNLRVDE
        V+Q++L NS LMPS C +C+E+ E +Q +     ++ CW  L  +F + W F  S  SN+  +L G  L     LIW N  +  L D+   F+CN R+  
Subjt:  VLQKKLPNSFLMPSVCLMCVEDAE-VQIICFLVDAIACWFRLFQIFNLQWVFKYS-RSNLHHLLYG-PLPPRSHLIWVNAIEKPLQDLVQDFKCNLRVDE

Query:  NKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV
         K   W    DI+    +  C  +K F+D+S QD+
Subjt:  NKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV

A0A5D3DE60 zf-RVT domain-containing protein1.4e-0733.53Show/hide
Query:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIAC--WFRLFQIFNLQWVFKYSRS-NLHHLLYGP-L
        LFSAI +  SP+  N LIWI++   +N++E+LQKK P + + PS+C +C++ ++     FL   ++   W R+F +FNL W F  S S ++  LL G  L
Subjt:  LFSAIWKFKSPKLTNFLIWILL-TSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIAC--WFRLFQIFNLQWVFKYSRS-NLHHLLYGP-L

Query:  PPRSHLIWVNAIEKPLQDLVQDF-KCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV
        P    +IW   + K L  L++ + + N R+  +K          +    +  CS  K FV++S QD+
Subjt:  PPRSHLIWVNAIEKPLQDLVQDF-KCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV

A0A6J1DIE2 uncharacterized protein LOC1110207652.2e-1335.19Show/hide
Query:  FSAIWKFKSPKLTNFLIWILLT-SLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFL--VDAIACWFRLFQIFNLQWVFKY-SRSNLHHLLYGP--L
        F+A+WK KSP+  N   WIL    LNTA+++QKK P+  L+PS C +C +  E     F     A  CW  LF  FN+ W F   +  N++ LL+GP  L
Subjt:  FSAIWKFKSPKLTNFLIWILLT-SLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFL--VDAIACWFRLFQIFNLQWVFKY-SRSNLHHLLYGP--L

Query:  PPRSHLIWVNAIEKPLQDLVQDFKCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFS
              +W+N ++  L +L   F+ N R+ E K   +   F  + F  S  CS    F+  S
Subjt:  PPRSHLIWVNAIEKPLQDLVQDFKCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTTCTCGGCAATTTGGAAGTTCAAGAGTCCCAAGCTAACAAACTTTCTAATCTGGATTTTGTTAACAAGCCTAAACACAGCTGAAGTTTTGCAAAAGAAGCTTCCTAA
TTCCTTTCTAATGCCATCCGTTTGCTTAATGTGTGTTGAGGATGCAGAGGTGCAGATCATTTGTTTTTTGGTTGACGCTATCGCATGTTGGTTCCGTCTATTCCAAATAT
TTAATTTGCAGTGGGTCTTTAAATATTCAAGAAGCAATCTTCATCATCTCCTGTATGGTCCTTTGCCTCCTAGATCCCATTTGATATGGGTTAATGCCATCGAAAAACCA
CTCCAAGATTTGGTTCAAGACTTCAAGTGTAACCTAAGGGTTGATGAGAATAAGCATGGGTGTTGGTTAGGGTGGTTTGATATTTCCGGATTCATAATTTCTCCACGGTG
TTCCTTTTCTAAATTATTTGTTGATTTTTCTTTCCAGGACGTT
mRNA sequenceShow/hide mRNA sequence
TTGTTCTCGGCAATTTGGAAGTTCAAGAGTCCCAAGCTAACAAACTTTCTAATCTGGATTTTGTTAACAAGCCTAAACACAGCTGAAGTTTTGCAAAAGAAGCTTCCTAA
TTCCTTTCTAATGCCATCCGTTTGCTTAATGTGTGTTGAGGATGCAGAGGTGCAGATCATTTGTTTTTTGGTTGACGCTATCGCATGTTGGTTCCGTCTATTCCAAATAT
TTAATTTGCAGTGGGTCTTTAAATATTCAAGAAGCAATCTTCATCATCTCCTGTATGGTCCTTTGCCTCCTAGATCCCATTTGATATGGGTTAATGCCATCGAAAAACCA
CTCCAAGATTTGGTTCAAGACTTCAAGTGTAACCTAAGGGTTGATGAGAATAAGCATGGGTGTTGGTTAGGGTGGTTTGATATTTCCGGATTCATAATTTCTCCACGGTG
TTCCTTTTCTAAATTATTTGTTGATTTTTCTTTCCAGGACGTT
Protein sequenceShow/hide protein sequence
LFSAIWKFKSPKLTNFLIWILLTSLNTAEVLQKKLPNSFLMPSVCLMCVEDAEVQIICFLVDAIACWFRLFQIFNLQWVFKYSRSNLHHLLYGPLPPRSHLIWVNAIEKP
LQDLVQDFKCNLRVDENKHGCWLGWFDISGFIISPRCSFSKLFVDFSFQDV