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MS006262 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006262
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold96:1646234..1646533
RNA-Seq ExpressionMS006262
SyntenyMS006262
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TQD89699.1 hypothetical protein C1H46_024693 [Malus baccata]6.3e-0529.31Show/hide
Query:  VRICLWILIHERLNTCCRLQM--PHMCLSPSW--LCKNSEED--------------QWYLFFQLHICDSLLDGSIQTFQHELIKGTDSKSHANLLWSNRI
        V+I +W++ +  LNTC R+Q   P MCLSP W  LCK  EE                W LF ++     +  G  +       K    +  + +LW   +
Subjt:  VRICLWILIHERLNTCCRLQM--PHMCLSPSW--LCKNSEED--------------QWYLFFQLHICDSLLDGSIQTFQHELIKGTDSKSHANLLWSNRI

Query:  AGLVWRLWFESNKKTF
          + W +W E NK+ F
Subjt:  AGLVWRLWFESNKKTF

TrEMBL top hitse value%identityAlignment
A0A540LTR6 zf-RVT domain-containing protein3.1e-0529.31Show/hide
Query:  VRICLWILIHERLNTCCRLQM--PHMCLSPSW--LCKNSEED--------------QWYLFFQLHICDSLLDGSIQTFQHELIKGTDSKSHANLLWSNRI
        V+I +W++ +  LNTC R+Q   P MCLSP W  LCK  EE                W LF ++     +  G  +       K    +  + +LW   +
Subjt:  VRICLWILIHERLNTCCRLQM--PHMCLSPSW--LCKNSEED--------------QWYLFFQLHICDSLLDGSIQTFQHELIKGTDSKSHANLLWSNRI

Query:  AGLVWRLWFESNKKTF
          + W +W E NK+ F
Subjt:  AGLVWRLWFESNKKTF

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein7.6e-0430.43Show/hide
Query:  KNVRICLWILIHERLNTCCRLQ--MPHMCLSPSW--LCKNSEEDQWYLFFQLHICDSLLD--------GSIQTFQHELIKGTDS---KSHANLLWSNRIA
        K  +  +W LIH  +NT  RLQ  +P+  LSP+W  +C  S+ED  +LF        L           S  T    LI+   S   ++   L+  N  A
Subjt:  KNVRICLWILIHERLNTCCRLQ--MPHMCLSPSW--LCKNSEEDQWYLFFQLHICDSLLD--------GSIQTFQHELIKGTDS---KSHANLLWSNRIA

Query:  GLVWRLWFESNKKTF
         ++W++W E N + F
Subjt:  GLVWRLWFESNKKTF

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein5.8e-0429.57Show/hide
Query:  KNVRICLWILIHERLNTCCRLQ--MPHMCLSPSW--LCKNSEEDQWYLFFQLHICDSLLDGSIQTFQ-----------HELIKGTDSKSHANLLWSNRIA
        K  +  +W LIH  +NT  RLQ  +P+  LSP+W  +C  S+ED  +LF        L   +    +            + I   + K+   L+  N IA
Subjt:  KNVRICLWILIHERLNTCCRLQ--MPHMCLSPSW--LCKNSEEDQWYLFFQLHICDSLLDGSIQTFQ-----------HELIKGTDSKSHANLLWSNRIA

Query:  GLVWRLWFESNKKTF
         L+W++W E N + F
Subjt:  GLVWRLWFESNKKTF

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.8e-0429.57Show/hide
Query:  KNVRICLWILIHERLNTCCRLQ--MPHMCLSPSW--LCKNSEEDQWYLFFQLHICDSLLDGSIQTFQ-----------HELIKGTDSKSHANLLWSNRIA
        K  +  +W LIH  +NT  RLQ  +P+  LSP+W  +C  S+ED  +LF        L   +    +            + I   + K+   L+  N IA
Subjt:  KNVRICLWILIHERLNTCCRLQ--MPHMCLSPSW--LCKNSEEDQWYLFFQLHICDSLLDGSIQTFQ-----------HELIKGTDSKSHANLLWSNRIA

Query:  GLVWRLWFESNKKTF
         L+W++W E N + F
Subjt:  GLVWRLWFESNKKTF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAATGTTAGAATTTGTCTATGGATCCTGATTCATGAGAGGCTAAATACTTGCTGCAGACTTCAGATGCCCCATATGTGCCTATCACCTAGTTGGTTGTGCAAAAATAG
TGAAGAAGACCAATGGTACTTGTTTTTTCAATTGCACATTTGCGACAGCCTGCTGGATGGATCTATTCAGACTTTTCAACATGAGCTCATCAAAGGGACAGACTCTAAAA
GTCACGCAAACCTTCTTTGGTCCAATAGGATAGCTGGTTTGGTGTGGAGACTCTGGTTTGAGAGTAACAAAAAGACTTTC
mRNA sequenceShow/hide mRNA sequence
AAAAATGTTAGAATTTGTCTATGGATCCTGATTCATGAGAGGCTAAATACTTGCTGCAGACTTCAGATGCCCCATATGTGCCTATCACCTAGTTGGTTGTGCAAAAATAG
TGAAGAAGACCAATGGTACTTGTTTTTTCAATTGCACATTTGCGACAGCCTGCTGGATGGATCTATTCAGACTTTTCAACATGAGCTCATCAAAGGGACAGACTCTAAAA
GTCACGCAAACCTTCTTTGGTCCAATAGGATAGCTGGTTTGGTGTGGAGACTCTGGTTTGAGAGTAACAAAAAGACTTTC
Protein sequenceShow/hide protein sequence
KNVRICLWILIHERLNTCCRLQMPHMCLSPSWLCKNSEEDQWYLFFQLHICDSLLDGSIQTFQHELIKGTDSKSHANLLWSNRIAGLVWRLWFESNKKTF