CuGenDBv2

Gene ID	MS006263
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNase H domain-containing protein
Genome location	scaffold96:1669622..1670029
RNA-Seq Expression	MS006263
Synteny	MS006263
Gene Ontology terms	GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]

6.2e-19

39.71

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Query:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI
        W PP+   +K++ DA+F     +AGL I+IR+    V+ SA  ++ HV  V  AE LA  EG+ LA+E GL+P Q+E DS+++FNL   + ED SE G +
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI

Query:  VQTVKMEVATV-IQASYSFTKRDGNGVAHMLAQRAL
          +++  V+++ I   +SF  R+GN  AH LA+  +
Subjt:  VQTVKMEVATV-IQASYSFTKRDGNGVAHMLAQRAL

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]

2.7e-38

63.5

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Query:  WLPPIERVYKIDTDASFSPIECNAGLG-IIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGN
        W P  E V+K+ TDASFS I+ NAGLG IIIR+ RGQV+ASATKYLEHV SVD+AEALA  EGLR+A+E G+ P+ LE DS RI+NLF  + E LS+TG+
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLG-IIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGN

Query:  IVQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRALR
        I++ VK  +AT +Q SYSFTKR GN +AH+LA+RAL+
Subjt:  IVQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRALR

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]

2.5e-36

63.7

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Query:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI
        WLPP +R+YKI+TDASF   + +AGLGIIIRN RGQVMASATKYLE++QSVD AEA+   EGL+LA +IG+ PV LE DS+RIFNLF    EDLSETG I
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI

Query:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL
        V   K      + AS++F KR+GN  AHMLA+RAL
Subjt:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]

4.7e-27

54.81

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Query:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI
        W PP E +YKI+TDASF   + +AGLGIII N RGQVMA+ATKYLE++QSVD AEA+A  EGL+LA EIG+ P                 +EDLSETG I
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI

Query:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL
        V   K      + AS++F KR+GN  AHMLA+RAL
Subjt:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]

1.5e-17

40.44

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Query:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI
        W PP   + K++ DA+F      AG+G+IIR+  G V  +A + L     VD  E  A  EG+ LA+E G +  Q+E DS RIFNL   +  D SE G +
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI

Query:  VQTVKMEVAT-VIQASYSFTKRDGNGVAHMLAQRAL
           +K+ +++   + S+SFT R+GN  AH+LAQ AL
Subjt:  VQTVKMEVAT-VIQASYSFTKRDGNGVAHMLAQRAL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C467 uncharacterized protein LOC111007775

3.0e-19

39.71

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Query:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI
        W PP+   +K++ DA+F     +AGL I+IR+    V+ SA  ++ HV  V  AE LA  EG+ LA+E GL+P Q+E DS+++FNL   + ED SE G +
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI

Query:  VQTVKMEVATV-IQASYSFTKRDGNGVAHMLAQRAL
          +++  V+++ I   +SF  R+GN  AH LA+  +
Subjt:  VQTVKMEVATV-IQASYSFTKRDGNGVAHMLAQRAL

A0A6J1CDQ4 uncharacterized protein LOC111010533

1.3e-38

63.5

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Query:  WLPPIERVYKIDTDASFSPIECNAGLG-IIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGN
        W P  E V+K+ TDASFS I+ NAGLG IIIR+ RGQV+ASATKYLEHV SVD+AEALA  EGLR+A+E G+ P+ LE DS RI+NLF  + E LS+TG+
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLG-IIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGN

Query:  IVQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRALR
        I++ VK  +AT +Q SYSFTKR GN +AH+LA+RAL+
Subjt:  IVQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRALR

A0A6J1CIF1 uncharacterized protein LOC111011237

1.2e-36

63.7

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Query:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI
        WLPP +R+YKI+TDASF   + +AGLGIIIRN RGQVMASATKYLE++QSVD AEA+   EGL+LA +IG+ PV LE DS+RIFNLF    EDLSETG I
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI

Query:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL
        V   K      + AS++F KR+GN  AHMLA+RAL
Subjt:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL

A0A6J1DAR4 uncharacterized protein LOC111018954

2.3e-27

54.81

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Query:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI
        W PP E +YKI+TDASF   + +AGLGIII N RGQVMA+ATKYLE++QSVD AEA+A  EGL+LA EIG+ P                 +EDLSETG I
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI

Query:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL
        V   K      + AS++F KR+GN  AHMLA+RAL
Subjt:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL

A0A6J1DBJ7 uncharacterized protein LOC111018973

7.3e-18

40.44

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Query:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI
        W PP   + K++ DA+F      AG+G+IIR+  G V  +A + L     VD  E  A  EG+ LA+E G +  Q+E DS RIFNL   +  D SE G +
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI

Query:  VQTVKMEVAT-VIQASYSFTKRDGNGVAHMLAQRAL
           +K+ +++   + S+SFT R+GN  AH+LAQ AL
Subjt:  VQTVKMEVAT-VIQASYSFTKRDGNGVAHMLAQRAL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

9.2e-05

23.7

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Query:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI
        W PP  +  K +TDA+++      G+G ++RN +G+V     + L  ++SV  AE  A    +          V  E DS  +  +  ++ E        
Subjt:  WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNI

Query:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL
        +Q ++  ++   +  + F  R+GN +A  +A+ +L
Subjt:  VQTVKMEVATVIQASYSFTKRDGNGVAHMLAQRAL

Sequences

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CDS sequence

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TGGCTTCCACCGATTGAAAGGGTATATAAGATTGACACTGATGCTTCATTCTCTCCTATTGAATGTAATGCAGGTTTAGGGATTATAATTAGAAATTTTAGAGGCCAAGT
GATGGCTTCTGCTACGAAATACCTAGAGCATGTTCAGTCGGTCGATAATGCAGAGGCCTTAGCGACTTCGGAGGGCCTACGGTTGGCGTTGGAGATCGGTCTTCTTCCAG
TGCAGCTGGAAATGGACTCTGCCAGAATCTTCAACCTTTTCGTTCATGAGGTGGAGGATTTATCAGAAACGGGAAATATTGTTCAAACTGTCAAAATGGAGGTGGCTACA
GTCATTCAAGCATCCTACAGCTTCACGAAAAGAGATGGCAACGGAGTAGCGCACATGCTTGCTCAGAGAGCTCTTCGG

mRNA sequence

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Protein sequence

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WLPPIERVYKIDTDASFSPIECNAGLGIIIRNFRGQVMASATKYLEHVQSVDNAEALATSEGLRLALEIGLLPVQLEMDSARIFNLFVHEVEDLSETGNIVQTVKMEVAT
VIQASYSFTKRDGNGVAHMLAQRALR

MS006263 (gene) of Bitter gourd (TR) v1 genome