; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006268 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006268
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLate embryogenesis abundant protein-like protein
Genome locationscaffold96:1723709..1724119
RNA-Seq ExpressionMS006268
SyntenyMS006268
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004864 - Late embryogenesis abundant protein, LEA_2 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647844.1 hypothetical protein Csa_000176 [Cucumis sativus]9.8e-4166.91Show/hide
Query:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL
        T SS   +I+VASVSV+NPNVASFKYSK + +IYY  KVIGEGETP GE KAK+T++MNVTV I   K+DD SSL+KD NSG SL+I+SYT+IPGRVKIL
Subjt:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL

Query:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS
        G IKKN LV+++CS+TYN++S+TIQG++C+Q V +S
Subjt:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS

XP_008437350.1 PREDICTED: uncharacterized protein LOC103482794 [Cucumis melo]3.4e-4167.65Show/hide
Query:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL
        T SS   +I+VASVSV+NPNVASFKYSK +TKIYY  KVIGEGETP GE KAK+T+KMNVTV I   KIDD SSL+KD NSG +L+I+SYT+IPGRVK+L
Subjt:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL

Query:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS
        G IKKN LV+++CS+TYN++S+TIQ ++C+Q V +S
Subjt:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS

XP_022146047.1 uncharacterized protein LOC111015350 [Momordica charantia]1.5e-6599.25Show/hide
Query:  SEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFI
        S+GEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFI
Subjt:  SEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFI

Query:  KKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVSD
        KKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVSD
Subjt:  KKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVSD

XP_031741228.1 uncharacterized protein LOC101212153 [Cucumis sativus]9.8e-4166.91Show/hide
Query:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL
        T SS   +I+VASVSV+NPNVASFKYSK + +IYY  KVIGEGETP GE KAK+T++MNVTV I   K+DD SSL+KD NSG SL+I+SYT+IPGRVKIL
Subjt:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL

Query:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS
        G IKKN LV+++CS+TYN++S+TIQG++C+Q V +S
Subjt:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS

XP_038875804.1 uncharacterized protein LOC120068170 [Benincasa hispida]1.1e-3966.42Show/hide
Query:  TFSSEGEMI-IVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKI
        T SS   +I +VASVSV+NPNVASFKYSK +T+IYY G VIGEGETP GE KAK+T+KMN+TV I  EKIDD SSL+KD N G +LNI+SYT+IPGRVKI
Subjt:  TFSSEGEMI-IVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKI

Query:  LGFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS
        LG IKK+ LV++ CS+T+N+RS+ IQG++C+Q V +S
Subjt:  LGFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS

TrEMBL top hitse value%identityAlignment
A0A0A0KMH1 LEA_2 domain-containing protein4.8e-4166.91Show/hide
Query:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL
        T SS   +I+VASVSV+NPNVASFKYSK + +IYY  KVIGEGETP GE KAK+T++MNVTV I   K+DD SSL+KD NSG SL+I+SYT+IPGRVKIL
Subjt:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL

Query:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS
        G IKKN LV+++CS+TYN++S+TIQG++C+Q V +S
Subjt:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS

A0A1S3ATT7 uncharacterized protein LOC1034827941.6e-4167.65Show/hide
Query:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL
        T SS   +I+VASVSV+NPNVASFKYSK +TKIYY  KVIGEGETP GE KAK+T+KMNVTV I   KIDD SSL+KD NSG +L+I+SYT+IPGRVK+L
Subjt:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL

Query:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS
        G IKKN LV+++CS+TYN++S+TIQ ++C+Q V +S
Subjt:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS

A0A5A7THA2 Late embryogenesis abundant protein-like protein1.6e-4167.65Show/hide
Query:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL
        T SS   +I+VASVSV+NPNVASFKYSK +TKIYY  KVIGEGETP GE KAK+T+KMNVTV I   KIDD SSL+KD NSG +L+I+SYT+IPGRVK+L
Subjt:  TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKIL

Query:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS
        G IKKN LV+++CS+TYN++S+TIQ ++C+Q V +S
Subjt:  GFIKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVS

A0A6J1CYE1 uncharacterized protein LOC1110153507.3e-6699.25Show/hide
Query:  SEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFI
        S+GEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFI
Subjt:  SEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFI

Query:  KKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVSD
        KKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVSD
Subjt:  KKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVSD

A0A6J1K4Z4 uncharacterized protein LOC1114912391.1e-3763.7Show/hide
Query:  SSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGF
        +S G +IIVASV V+NPNVASFKYSK T  IYY G +IGEGETP GEAKAK+TM MNVTV I  E++D+  SLM+DL SG  LNI+SY +IPGRVKI+GF
Subjt:  SSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGF

Query:  IKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVSD
        IKK   V++ CS TYN ++QTI+ E+C++ V++SD
Subjt:  IKKNLLVRMNCSMTYNTRSQTIQGENCNQPVEVSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family9.5e-2643.65Show/hide
Query:  IVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFIKKNLLV
        ++  VSVKNPN ASFKYS TTT IYY G ++GE     G+A+   T +MNVTV I L++I     L ++++    +N+ SYT++ G+VKI+G +KK++ V
Subjt:  IVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFIKKNLLV

Query:  RMNCSMTYNTRSQTIQGENCNQPVEV
        +MNC+M  N   Q IQ  +C + +++
Subjt:  RMNCSMTYNTRSQTIQGENCNQPVEV

AT3G54200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family1.7e-1125.86Show/hide
Query:  VSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFIKKNLLVRMNC
        +S+KNPN   F Y  ++  + Y G+VIGE   PA    A++T+ +N+T+ +  +++   + L+ D+ +G  + +N++ K+ G+V +L   K  +    +C
Subjt:  VSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFIKKNLLVRMNC

Query:  SMTYNTRSQTIQGENC
         ++ +   + +  ++C
Subjt:  SMTYNTRSQTIQGENC

AT4G23930.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family6.9e-0827.05Show/hide
Query:  SVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSS-------LMKDLNSGSSLNINSYTKIPGRVKILGFIKKNL
        +V+NPN A+F +     +++Y G  IG    PAGE ++  T +M  T ++    +   SS             SGS++ I S  ++ GRV++LG     +
Subjt:  SVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSS-------LMKDLNSGSSLNINSYTKIPGRVKILGFIKKNL

Query:  LVRMNCSMTYNTRSQTIQGENC
          + NC +  ++   +I    C
Subjt:  LVRMNCSMTYNTRSQTIQGENC

AT4G23930.2 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family2.4e-0526.83Show/hide
Query:  VSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSS-------LMKDLNSGSSLNINSYTKIPGRVKILGFIKKN
        +SV +  V SF  S   + ++Y G  IG    PAGE ++  T +M  T ++    +   SS             SGS++ I S  ++ GRV++LG     
Subjt:  VSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSS-------LMKDLNSGSSLNINSYTKIPGRVKILGFIKKN

Query:  LLVRMNCSMTYNTRSQTIQGENC
        +  + NC +  ++   +I    C
Subjt:  LLVRMNCSMTYNTRSQTIQGENC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACTTTTTCATCAGAAGGTGAGATGATCATTGTGGCAAGCGTCTCCGTGAAAAACCCTAATGTTGCATCCTTCAAATACTCAAAAACCACGACAAAAATTTATTACGGTGG
CAAGGTCATCGGAGAGGGCGAGACCCCGGCCGGGGAGGCGAAGGCGAAGGAGACGATGAAGATGAATGTGACGGTGGCGATTGGGCTTGAGAAGATCGATGACGTTTCGA
GTTTGATGAAGGATTTGAACTCGGGATCATCTTTGAATATCAATAGCTACACGAAGATTCCGGGGAGGGTCAAAATACTTGGCTTCATCAAGAAAAACTTGCTTGTGAGG
ATGAACTGTTCCATGACTTACAACACTAGAAGTCAGACCATTCAAGGGGAAAATTGCAATCAACCAGTAGAAGTCTCTGAT
mRNA sequenceShow/hide mRNA sequence
ACTTTTTCATCAGAAGGTGAGATGATCATTGTGGCAAGCGTCTCCGTGAAAAACCCTAATGTTGCATCCTTCAAATACTCAAAAACCACGACAAAAATTTATTACGGTGG
CAAGGTCATCGGAGAGGGCGAGACCCCGGCCGGGGAGGCGAAGGCGAAGGAGACGATGAAGATGAATGTGACGGTGGCGATTGGGCTTGAGAAGATCGATGACGTTTCGA
GTTTGATGAAGGATTTGAACTCGGGATCATCTTTGAATATCAATAGCTACACGAAGATTCCGGGGAGGGTCAAAATACTTGGCTTCATCAAGAAAAACTTGCTTGTGAGG
ATGAACTGTTCCATGACTTACAACACTAGAAGTCAGACCATTCAAGGGGAAAATTGCAATCAACCAGTAGAAGTCTCTGAT
Protein sequenceShow/hide protein sequence
TFSSEGEMIIVASVSVKNPNVASFKYSKTTTKIYYGGKVIGEGETPAGEAKAKETMKMNVTVAIGLEKIDDVSSLMKDLNSGSSLNINSYTKIPGRVKILGFIKKNLLVR
MNCSMTYNTRSQTIQGENCNQPVEVSD