; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006284 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006284
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationscaffold247:62335..62550
RNA-Seq ExpressionMS006284
SyntenyMS006284
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-0746.03Show/hide
Query:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGS
        +PQM+A +A    N D+NWYPDSGA+NH+T + +NL++ S+Y  GN++   N + L + H GS
Subjt:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGS
XP_022136882.1 dr1-associated corepressor homolog isoform X1 [Momordica charantia]1.9e-1169.23Show/hide
Query:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGN
        N  M AFLA Q FN+DTNWYPDSGA+NHVT NFNNLA S++Y   N+V+IGN
Subjt:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGN
XP_022136883.1 dr1-associated corepressor homolog isoform X2 [Momordica charantia]1.9e-1169.23Show/hide
Query:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGN
        N  M AFLA Q FN+DTNWYPDSGA+NHVT NFNNLA S++Y   N+V+IGN
Subjt:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGN
XP_022147537.1 uncharacterized protein LOC111016442 [Momordica charantia]3.3e-1152.17Show/hide
Query:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTG-SSFVTP
        +PQM+A L     N DTNWYPD GA+NH+T NFNNL V ++Y+  N+V++GN A   + H G SSF +P
Subjt:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTG-SSFVTP
XP_022156747.1 uncharacterized protein LOC111023586 [Momordica charantia]1.2e-0844.62Show/hide
Query:  PQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGSSFV
        PQM A +    FN+D  WYPDSGA+NHVT +F N ++ S Y    K+++GN   L + H GS+ +
Subjt:  PQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGSSFV
TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-946.2e-0846.03Show/hide
Query:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGS
        +PQM+A +A    N D+NWYPDSGA+NH+T + +NL++ S+Y  GN++   N + L + H GS
Subjt:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGS
A0A6J1C6N9 dr1-associated corepressor homolog isoform X19.3e-1269.23Show/hide
Query:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGN
        N  M AFLA Q FN+DTNWYPDSGA+NHVT NFNNLA S++Y   N+V+IGN
Subjt:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGN
A0A6J1C8R2 dr1-associated corepressor homolog isoform X29.3e-1269.23Show/hide
Query:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGN
        N  M AFLA Q FN+DTNWYPDSGA+NHVT NFNNLA S++Y   N+V+IGN
Subjt:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGN
A0A6J1D2M1 uncharacterized protein LOC1110164421.6e-1152.17Show/hide
Query:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTG-SSFVTP
        +PQM+A L     N DTNWYPD GA+NH+T NFNNL V ++Y+  N+V++GN A   + H G SSF +P
Subjt:  NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTG-SSFVTP
A0A6J1DSS1 uncharacterized protein LOC1110235865.6e-0944.62Show/hide
Query:  PQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGSSFV
        PQM A +    FN+D  WYPDSGA+NHVT +F N ++ S Y    K+++GN   L + H GS+ +
Subjt:  PQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGSSFV
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.6e-0538.71Show/hide
Query:  QMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGSS
        Q  A LA  +     NW  DSGA++H+T +FNNL++   Y  G+ V + + +T+ + HTGS+
Subjt:  QMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGSS
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.2e-0540.32Show/hide
Query:  QMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGSS
        Q  A LA  +     NW  DSGA++H+T +FNNL+    Y  G+ V I + +T+ + HTGS+
Subjt:  QMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGSS
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATCCTCAAATGAATGCCTTTTTGGCACCACAAACGTTCAATCAGGATACCAATTGGTATCCTGATTCTGGAGCATCTAATCACGTTACACAAAATTTCAATAATCTTGC
AGTCAGTTCAGATTATATGTGTGGTAACAAAGTGAAAATTGGAAATGTTGCAACTTTGCAAGTTCTTCACACTGGTTCTTCTTTTGTTACACCTTTTACGACACTC
mRNA sequenceShow/hide mRNA sequence
AATCCTCAAATGAATGCCTTTTTGGCACCACAAACGTTCAATCAGGATACCAATTGGTATCCTGATTCTGGAGCATCTAATCACGTTACACAAAATTTCAATAATCTTGC
AGTCAGTTCAGATTATATGTGTGGTAACAAAGTGAAAATTGGAAATGTTGCAACTTTGCAAGTTCTTCACACTGGTTCTTCTTTTGTTACACCTTTTACGACACTC
Protein sequenceShow/hide protein sequence
NPQMNAFLAPQTFNQDTNWYPDSGASNHVTQNFNNLAVSSDYMCGNKVKIGNVATLQVLHTGSSFVTPFTTL