; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006289 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006289
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationscaffold247:227351..227626
RNA-Seq ExpressionMS006289
SyntenyMS006289
Gene Ontology termsGO:0006810 - transport (biological process)
GO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP50444.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]3.4e-1347.83Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL
        GK  LTVGN   LK    G S L    T  + L LK+IL+ PK+ +N+ +I+ +  DN+ YVEF+   CFVKDK+T R++L G +KDGLY+L
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL

PON73930.1 hypothetical protein PanWU01x14_054800, partial [Parasponia andersonii]6.9e-1445.65Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL
        GK  L VGN +KL  SHVG +   T   +   L+LKNILH P + +N+ +I+    DNN  +EFY   C +KDK TK+++  G L+DGLY+L
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL

PON91412.1 Zinc finger, CCHC-type, partial [Trema orientale]6.9e-1444.57Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL
        GK  L VGN ++L  SH+G S +     T + L L NILH P++ +N+ +I+    DN+  +EFY   CFV DK T++ +L G+LKDGLY+L
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL

RVW60229.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.5e-1342.86Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYR
        G   + +GN   LK SH+G S   + S+  + L LKNIL  P +K+N+ +++    DNN Y EF+PK CFVKDK    ++L G L  GLY+
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYR

TXG55646.1 hypothetical protein EZV62_020902 [Acer yangbiense]2.6e-1343.48Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL
        G   L VGN  +L  SHVG   L   S T   +ILK +LH P++++N+ +++ ++ DN+ ++EF+   CFVKDK+T+  VL G LK+GLY+L
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL

TrEMBL top hitse value%identityAlignment
A0A803NUC9 Uncharacterized protein2.1e-1647.83Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL
        GK  +T+G+  KL  SHVG   +QT S+ P  L+LKN+LH P + +N+ +++ +  DNN  +EF+  FC VKD+ T +VVLH  LKDGLY+L
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL

A0A803P4G6 Uncharacterized protein5.5e-1747.83Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL
        GK  LTVG+ +KL  SH+G  +L+T   + + L+LK +LH PK+ +N+ ++  +  DNN  +EFY   C VKDK TK+V+L GVLKDGLY++
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL

A0A803PEH4 Uncharacterized protein1.4e-1546.74Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL
        GK  + VGN +KL+ +H+G   L     +   L+LK++L  PK+ +N+ +++ +  DNN  +EFY  FC VKDKVTK+V+LHGVLKD LY+L
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL

A0A803PM38 Uncharacterized protein6.1e-1651.65Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYR
        GK  +TV N N+L   H+G   LQT S +P  LILK ILH P + +N+ +I+ + +DNN  VEF    CFVKDK T +VVL G LKDGLY+
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYR

A0A803PR45 Uncharacterized protein4.2e-1753.26Show/hide
Query:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL
        GK  LTVG+ N+L  SHVG S LQ  S +  KL+L ++LH PK+ +N+ +I+ + ADN  +VEF+   CFVKD  TK VVL G LKDGLY+L
Subjt:  GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTAAAGGTGTGTTAACAGTTGGCAATGATAATAAATTAAAATTTTCACATGTTGGACGTAGTTATTTGCAAACATGTTCAACCACTCCTCGCAAACTTATTCTTAAAAA
CATCCTCCATGGTCCAAAAGTGAAAAGAAATATTTTTACTATTGCTACAATGATTGCCGATAACAACTGTTACGTTGAATTTTATCCTAAATTTTGTTTTGTGAAGGACA
AGGTAACAAAGAGGGTTGTGCTACATGGAGTTCTTAAGGATGGACTGTATCGACTG
mRNA sequenceShow/hide mRNA sequence
GGTAAAGGTGTGTTAACAGTTGGCAATGATAATAAATTAAAATTTTCACATGTTGGACGTAGTTATTTGCAAACATGTTCAACCACTCCTCGCAAACTTATTCTTAAAAA
CATCCTCCATGGTCCAAAAGTGAAAAGAAATATTTTTACTATTGCTACAATGATTGCCGATAACAACTGTTACGTTGAATTTTATCCTAAATTTTGTTTTGTGAAGGACA
AGGTAACAAAGAGGGTTGTGCTACATGGAGTTCTTAAGGATGGACTGTATCGACTG
Protein sequenceShow/hide protein sequence
GKGVLTVGNDNKLKFSHVGRSYLQTCSTTPRKLILKNILHGPKVKRNIFTIATMIADNNCYVEFYPKFCFVKDKVTKRVVLHGVLKDGLYRL