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MS006300 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006300
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold247:439426..439620
RNA-Seq ExpressionMS006300
SyntenyMS006300
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RHN74096.1 putative RNA-directed DNA polymerase [Medicago truncatula]1.7e-0646.77Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW
        Q IN  KS L+CS N   D +  + + +G++ V   G YLGLPS + RSK   FK IKDR+W
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW

XP_022143493.1 uncharacterized protein LOC111013370 [Momordica charantia]2.0e-0750Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW
        Q INF KS L  SPNVH   Q +L S++ + LV   G+Y GLPS+ SR K +D++ +KDR+W
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW

XP_022150019.1 uncharacterized protein LOC111018297 [Momordica charantia]8.6e-1162.3Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRV
        QK+NFDKS LW S NV   F+ Y+ S+ GMKLV  L DYLGLPS+LS S+S DF  IKD V
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRV

XP_039683522.1 uncharacterized protein LOC120576915 [Medicago truncatula]2.2e-0646.77Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW
        Q IN  KS L+CS N   D +  + +  G++ V  +G YLGLPS + RSK   FK IKDR+W
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW

XP_039687236.1 uncharacterized protein LOC120579339 [Medicago truncatula]5.8e-0746.77Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW
        Q IN  KS ++CS N  T+ Q  + + +G+K V   G YLGLPS + RSK   FK +KDR+W
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW

TrEMBL top hitse value%identityAlignment
A0A396J7A3 Putative RNA-directed DNA polymerase8.1e-0746.77Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW
        Q IN  KS L+CS N   D +  + + +G++ V   G YLGLPS + RSK   FK IKDR+W
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW

A0A5B7AER2 Reverse transcriptase domain-containing protein2.8e-0750Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW
        Q+INFDKS L  SPNV  D +  ++ ++G+ L      YLGLPS + RSK + F  IKDRVW
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW

A0A6J1CQU9 uncharacterized protein LOC1110133709.6e-0850Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW
        Q INF KS L  SPNVH   Q +L S++ + LV   G+Y GLPS+ SR K +D++ +KDR+W
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW

A0A6J1D8T0 uncharacterized protein LOC1110182974.2e-1162.3Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRV
        QK+NFDKS LW S NV   F+ Y+ S+ GMKLV  L DYLGLPS+LS S+S DF  IKD V
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRV

A0A803PRL1 Uncharacterized protein1.4e-0643.55Show/hide
Query:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW
        Q++NF KS L+ SPN    +Q  +Q  + + +   L  YLGLP    RSKS  F S+KDR+W
Subjt:  QKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCTTCAGGCAAAAGATCAATTTTGATAAATCTATTTTATGGTGCTCGCCAAATGTGCATACTGATTTTCAGATTTATTTACAATCTGTGGTGGGTATGAAATTGGTTCA
AAGTTTGGGTGATTATTTAGGGCTTCCGTCAAACCTTTCTCGAAGTAAATCCAGGGATTTTAAATCCATTAAGGATAGGGTTTGG
mRNA sequenceShow/hide mRNA sequence
AGCTTCAGGCAAAAGATCAATTTTGATAAATCTATTTTATGGTGCTCGCCAAATGTGCATACTGATTTTCAGATTTATTTACAATCTGTGGTGGGTATGAAATTGGTTCA
AAGTTTGGGTGATTATTTAGGGCTTCCGTCAAACCTTTCTCGAAGTAAATCCAGGGATTTTAAATCCATTAAGGATAGGGTTTGG
Protein sequenceShow/hide protein sequence
SFRQKINFDKSILWCSPNVHTDFQIYLQSVVGMKLVQSLGDYLGLPSNLSRSKSRDFKSIKDRVW