CuGenDBv2

Gene ID	MS006304
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal S3-like protein
Genome location	scaffold247:511484..511979
RNA-Seq Expression	MS006304
Synteny	MS006304
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR036419 - Ribosomal protein S3, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

OVA11808.1 Ribosomal protein S3 [Macleaya cordata]

1.8e-33

57.4

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   VN+YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV
         L R+GV+GIKVKI+LD DP+GKQGP TP           L ++VTI + K+E+++I  T+ +ATDIEV
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV

TXG61628.1 hypothetical protein EZV62_012991 [Acer yangbiense]

1.8e-33

57.4

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   VN+YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV
         L R+GV+GIKVKI+LD DP+GKQGP TP           L ++VTI   K+E++++  T+ VATDIEV
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV

XP_004141698.1 40S ribosomal protein S3-3 [Cucumis sativus]

1.4e-33

57.65

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   V +YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFI-TFTVSVATDIEV
         L R+GV+GIKVKI+LD DP+GKQGPPTP           L ++VTI + KEE+DFI    V   T+IEV
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFI-TFTVSVATDIEV

XP_010273935.1 PREDICTED: 40S ribosomal protein S3-3-like [Nelumbo nucifera]

2.4e-33

57.4

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   VN+YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV
         L R+GV+GIKVKI+LD DP+GKQGP TP           L ++VTI   KEE+++I  ++ +ATDIEV
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV

XP_038896691.1 40S ribosomal protein S3-3 [Benincasa hispida]

2.2e-34

57.14

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E NVELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   V +YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIE
         L R+GV+GIKVKI+LD DP+GKQGPPTP           L ++VTI   KEE+DF +    + T+IE
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIE

TrEMBL top hits

e value

%identity

Alignment

A0A1U8AHK4 40S ribosomal protein S3-3-like

1.2e-33

57.4

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   VN+YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV
         L R+GV+GIKVKI+LD DP+GKQGP TP           L ++VTI   KEE+++I  ++ +ATDIEV
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV

A0A1U8B035 40S ribosomal protein S3-3-like

1.2e-33

57.4

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   VN+YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV
         L R+GV+GIKVKI+LD DP+GKQGP TP           L ++VTI   KEE+++I  ++ +ATDIEV
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV

A0A200QMT6 Ribosomal protein S3

8.9e-34

57.4

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   VN+YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV
         L R+GV+GIKVKI+LD DP+GKQGP TP           L ++VTI + K+E+++I  T+ +ATDIEV
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV

A0A5C7HXR2 Uncharacterized protein

8.9e-34

57.4

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   VN+YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV
         L R+GV+GIKVKI+LD DP+GKQGP TP           L ++VTI   K+E++++  T+ VATDIEV
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV

A0A5D3BYH2 40S ribosomal protein S3-3

1.5e-33

56.21

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF E +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS   V +YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV
         L R+GV+GIKVKI+LD DP+GKQGPPTP           L ++VTI   KEE+DFI    +V    E+
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEV

SwissProt top hits

e value

%identity

Alignment

P02350 40S ribosomal protein S3-A

3.3e-25

55.38

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K   F E +VELY+EKV  +GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EV+VSG  +    KSMKF D     S   VN Y+D  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPL
         L R+GV+GIKVKI+L  DP GK GP  PL
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPL

P47835 40S ribosomal protein S3-B

3.3e-25

55.38

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K   F E +VELY+EKV  +GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EV+VSG  +    KSMKF D     S   VN Y+D  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPL
         L R+GV+GIKVKI+L  DP GK GP  PL
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPL

Q9FJA6 40S ribosomal protein S3-3

2.3e-31

52.12

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF + +VELY+EKV N+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS     +YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVAT
         L R+GV+G+KVKI+LD DP+GKQGP TPL +            V I++T +E D       V T
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVAT

Q9M339 40S ribosomal protein S3-2

9.8e-30

49.41

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF   +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS     +YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEVI
         L R+GV+GIKVK++LD DP+G  GP TPL +            V I+++ +E++ I     VA    ++
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEVI

Q9SIP7 40S ribosomal protein S3-1

3.0e-31

61.54

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF   +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS     +YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPL
         L R+GV+GIKVKI+LD DP GK GP TPL
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPL

Arabidopsis top hits

e value

%identity

Alignment

AT2G31610.1 Ribosomal protein S3 family protein

2.2e-32

61.54

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF   +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS     +YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPL
         L R+GV+GIKVKI+LD DP GK GP TPL
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPL

AT3G53870.1 Ribosomal protein S3 family protein

6.9e-31

49.41

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF   +VELY+EKVNN+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS     +YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEVI
         L R+GV+GIKVK++LD DP+G  GP TPL +            V I+++ +E++ I     VA    ++
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEVI

AT5G35530.1 Ribosomal protein S3 family protein

1.7e-32

52.12

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Query:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH
        K  KF + +VELY+EKV N+GLCAI     L +KL  GLA+ RACYGVL F M+S AKG EVIVSG  +A   KSMKFKD Y  SS     +YID  VRH
Subjt:  KHLKFLEINVELYSEKVNNKGLCAI----PLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSG-CQALACKSMKFKDEYARSSRLLVNKYIDLVVRH

Query:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVAT
         L R+GV+G+KVKI+LD DP+GKQGP TPL +            V I++T +E D       V T
Subjt:  -LPREGVIGIKVKIILDSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVAT

Sequences

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CDS sequence

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AAACATCTCAAGTTTCTTGAAATAAATGTTGAGCTTTATTCTGAAAAAGTCAATAACAAAGGACTCTGTGCTATTCCTCTGCCTTTCAAGCTTCCAAATGGCCTTGCTCT
GTGGAGGGCTTGCTATGGTGTCCTTGGATTTTGCATGGACAGTAGAGCTAAAGGAGCTGAGGTTATTGTTAGTGGTTGCCAGGCCTTAGCATGCAAATCCATGAAATTCA
AGGATGAATATGCGAGATCCTCAAGATTGCTAGTGAACAAGTATATAGACTTGGTTGTGAGACACCTTCCTAGAGAGGGTGTCATAGGTATCAAGGTCAAGATCATTCTT
GATTCGGACCCTGAGGGCAAGCAAGGTCCACCGACACCCCTTCTCAATATGAGCAAGCAAGGTCCACTAACACTCCTTAATATGGTTACTATCCTTAATACGAAGGAGGA
ACAGGATTTTATCACATTCACTGTGAGTGTAGCAACTGATATAGAGGTTATAATA

mRNA sequence

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Protein sequence

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KHLKFLEINVELYSEKVNNKGLCAIPLPFKLPNGLALWRACYGVLGFCMDSRAKGAEVIVSGCQALACKSMKFKDEYARSSRLLVNKYIDLVVRHLPREGVIGIKVKIIL
DSDPEGKQGPPTPLLNMSKQGPLTLLNMVTILNTKEEQDFITFTVSVATDIEVII

MS006304 (gene) of Bitter gourd (TR) v1 genome