; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006305 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006305
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChorein_N domain-containing protein
Genome locationscaffold247:512283..524859
RNA-Seq ExpressionMS006305
SyntenyMS006305
Gene Ontology termsNA
InterPro domainsIPR026854 - Vacuolar protein sorting-associated protein 13-like, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038223.1 putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo var. makuwa]7.1e-5097.2Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EWSSDAVE+REFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMIGDL
        LDM GDL
Subjt:  LDMIGDL

KGN66651.1 hypothetical protein Csa_007236 [Cucumis sativus]5.4e-5095.41Show/hide
Query:  VIGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV
        + GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EWSSDAVE+REFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV
Subjt:  VIGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV

Query:  MFLDMIGDL
        MFLDM GDL
Subjt:  MFLDMIGDL

XP_011660209.1 uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]7.1e-5097.2Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EWSSDAVE+REFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMIGDL
        LDM GDL
Subjt:  LDMIGDL

XP_022149963.1 uncharacterized protein LOC111018256 isoform X1 [Momordica charantia]1.3e-51100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMIGDL
        LDMIGDL
Subjt:  LDMIGDL

XP_022149964.1 uncharacterized protein LOC111018256 isoform X2 [Momordica charantia]1.3e-51100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMIGDL
        LDMIGDL
Subjt:  LDMIGDL

TrEMBL top hitse value%identityAlignment
A0A0A0M352 Chorein_N domain-containing protein2.6e-5095.41Show/hide
Query:  VIGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV
        + GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EWSSDAVE+REFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV
Subjt:  VIGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV

Query:  MFLDMIGDL
        MFLDM GDL
Subjt:  MFLDMIGDL

A0A1S3B8J3 putative vacuolar protein sorting-associated protein 13A isoform X13.4e-5097.2Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EWSSDAVE+REFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMIGDL
        LDM GDL
Subjt:  LDMIGDL

A0A5A7T5L4 Putative vacuolar protein sorting-associated protein 13A isoform X13.4e-5097.2Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EWSSDAVE+REFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMIGDL
        LDM GDL
Subjt:  LDMIGDL

A0A6J1D861 uncharacterized protein LOC111018256 isoform X16.2e-52100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMIGDL
        LDMIGDL
Subjt:  LDMIGDL

A0A6J1D8L0 uncharacterized protein LOC111018256 isoform X26.2e-52100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMIGDL
        LDMIGDL
Subjt:  LDMIGDL

SwissProt top hitse value%identityAlignment
A1Z713 Vacuolar protein sorting-associated protein 132.0e-1032.38Show/hide
Query:  VIGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDN-HAGQSFISYITAKILDNIQISIRNFH
        + G +G+L +KIPWK L   P+I+ +ED+Y+  S  ++ +++++   + E   KKA + A E A+      D   A   F   +TA+I++N+Q+ I N H
Subjt:  VIGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDN-HAGQSFISYITAKILDNIQISIRNFH

Query:  VMFLD
        + + D
Subjt:  VMFLD

P87319 Vacuolar protein sorting-associated protein 13a1.8e-0833.04Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAE-LAKLSRRVCDNHAG-------QSFISYITAKILDNIQIS
        G +G  +++IPW  L    + I +EDIY+S   +     + D +E+ + A K+ ++ + E L K  R   +  +        QSFI Y+ AK+ DNIQI 
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAE-LAKLSRRVCDNHAG-------QSFISYITAKILDNIQIS

Query:  IRNFHVMFLDMIGDL
        I   H+ F D + DL
Subjt:  IRNFHVMFLDMIGDL

Q07878 Vacuolar protein sorting-associated protein 132.8e-0931.36Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVC-------------DNHAGQSFISYITAKILD
        G +G L + +PW  L   P+ II+ED Y+  S R ++  + + + +R F  K  K++  EL   +R +               N+AG  F+  +T KI+D
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVC-------------DNHAGQSFISYITAKILD

Query:  NIQISIRNFHVMFLDMIG
        N+Q++I+N H+ + DM G
Subjt:  NIQISIRNFHVMFLDMIG

Q54LB8 Putative vacuolar protein sorting-associated protein 13A1.9e-0528.7Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIY-ISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDN-------HAGQSFISYITAKILDNIQIS
        G +G+L +K+PWK L   P+II ++ IY ++  Q  + ++      +++   KK K+   E  K  +   +N           SF   +  KI+DN+QI 
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIY-ISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDN-------HAGQSFISYITAKILDNIQIS

Query:  IRNFHVMF
        I   H+ F
Subjt:  IRNFHVMF

Q555C6 Putative vacuolar protein sorting-associated protein 13B7.2e-0526.13Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQ------SFISYITAKILDNIQISIR
        G +G L++KIPW  L   P+I  ++ I + A  +   +++ +  ++ +   K+ K+   EL +  +    + A Q      +F++ +  KIL+NIQ+ I+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQ------SFISYITAKILDNIQISIR

Query:  NFHVMFLDMIG
        +FH+ + ++ G
Subjt:  NFHVMFLDMIG

Arabidopsis top hitse value%identityAlignment
AT1G48090.1 calcium-dependent lipid-binding family protein1.7e-0929.25Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDN----HAGQSFISYITAKILDNIQISIRNF
        G VG +++K+PWK LG +P+I++++ +++ A    D+    +    +    K  +I  AE A L  R          G S++  I A I+ N+++SI N 
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDN----HAGQSFISYITAKILDNIQISIRNF

Query:  HVMFLD
        H+ + D
Subjt:  HVMFLD

AT4G17140.1 pleckstrin homology (PH) domain-containing protein1.3e-0626.67Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD-EEWSSDAVERREFAGKKAKIAAAELAKLSR-RVCDNHAGQSFISYITAKILDNIQISIRNFHV
        G +G + +K+PW +LG +P+++ L+ I++ A    D E  S D+++      K+  I   E   + R R       +S++  +   I+ N+++SI N H+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD-EEWSSDAVERREFAGKKAKIAAAELAKLSR-RVCDNHAGQSFISYITAKILDNIQISIRNFHV

Query:  MFLDM
         + D+
Subjt:  MFLDM

AT4G17140.2 pleckstrin homology (PH) domain-containing protein1.3e-0626.67Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD-EEWSSDAVERREFAGKKAKIAAAELAKLSR-RVCDNHAGQSFISYITAKILDNIQISIRNFHV
        G +G + +K+PW +LG +P+++ L+ I++ A    D E  S D+++      K+  I   E   + R R       +S++  +   I+ N+++SI N H+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD-EEWSSDAVERREFAGKKAKIAAAELAKLSR-RVCDNHAGQSFISYITAKILDNIQISIRNFHV

Query:  MFLDM
         + D+
Subjt:  MFLDM

AT5G24740.1 Protein of unknown function (DUF1162)2.3e-3870.59Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVG+LSIKIPWKKL  DP+ I++ED++I ASQR+D+EWSSD VE+REFAGKKAK+A+AELAKLSRRV DN  G S++SYITAKILD++Q+SI+NFH+++
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LD
         D
Subjt:  LD

AT5G24740.2 Protein of unknown function (DUF1162)2.3e-3870.59Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVG+LSIKIPWKKL  DP+ I++ED++I ASQR+D+EWSSD VE+REFAGKKAK+A+AELAKLSRRV DN  G S++SYITAKILD++Q+SI+NFH+++
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LD
         D
Subjt:  LD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGATAGGTCGTGTTGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCTATCATTATCATTTTGGAGGATATATACATTTCTGCATCTCAACGGGA
TGACGAAGAGTGGAGCTCAGATGCGGTTGAAAGAAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCTGCAGAGCTGGCAAAATTATCAAGGCGTGTATGTGATAATC
ACGCCGGACAATCATTTATCTCTTACATTACTGCAAAGATTCTTGACAACATCCAAATATCAATTAGAAATTTTCACGTCATGTTCCTTGATATGATTGGTGACCTG
mRNA sequenceShow/hide mRNA sequence
GTGATAGGTCGTGTTGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCTATCATTATCATTTTGGAGGATATATACATTTCTGCATCTCAACGGGA
TGACGAAGAGTGGAGCTCAGATGCGGTTGAAAGAAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCTGCAGAGCTGGCAAAATTATCAAGGCGTGTATGTGATAATC
ACGCCGGACAATCATTTATCTCTTACATTACTGCAAAGATTCTTGACAACATCCAAATATCAATTAGAAATTTTCACGTCATGTTCCTTGATATGATTGGTGACCTG
Protein sequenceShow/hide protein sequence
VIGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWSSDAVERREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMFLDMIGDL