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MS006309 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006309
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVPS13 domain-containing protein
Genome locationscaffold247:538595..538786
RNA-Seq ExpressionMS006309
SyntenyMS006309
Gene Ontology termsNA
InterPro domainsIPR031646 - Vacuolar protein sorting-associated protein 13, second N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149963.1 uncharacterized protein LOC111018256 isoform X1 [Momordica charantia]3.3e-2398.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        +YGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

XP_022149964.1 uncharacterized protein LOC111018256 isoform X2 [Momordica charantia]3.3e-2398.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        +YGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

XP_023916870.1 uncharacterized protein LOC112028414 isoform X1 [Quercus suber]2.2e-1986.27Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        RYGR+RPWCSPLSRK+ GWQI WWHYAQESVLSDVR  LKKTSWRYLG RL
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

XP_030964003.1 uncharacterized protein LOC115985180 isoform X2 [Quercus lobata]2.2e-1986.27Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        RYGR+RPWCSPLSRK+ GWQI WWHYAQESVLSDVR  LKKTSWRYLG RL
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

XP_030964004.1 uncharacterized protein LOC115985180 isoform X3 [Quercus lobata]2.2e-1986.27Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        RYGR+RPWCSPLSRK+ GWQI WWHYAQESVLSDVR  LKKTSWRYLG RL
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

TrEMBL top hitse value%identityAlignment
A0A0A0LXR7 VPS13 domain-containing protein5.5e-2479.03Show/hide
Query:  IFHSAPNLLSCRYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        ++HS+PN L CRYGRFRPWC PLSRKVKGWQ+ WWHYAQ+SVL DVRK LKK SWRYLG RL
Subjt:  IFHSAPNLLSCRYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

A0A2P5AKG0 Vacuolar protein sorting-associated protein5.3e-1982.35Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        +YGR+RPWCSPLS+K+KGWQ  WWHYAQESVLSDVRK LK+TSWRYLG RL
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

A0A6J1D861 uncharacterized protein LOC111018256 isoform X11.6e-2398.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        +YGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

A0A6J1D8L0 uncharacterized protein LOC111018256 isoform X21.6e-2398.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        +YGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

A0A7N2LH80 Uncharacterized protein1.1e-1986.27Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        RYGR+RPWCSPLSRK+ GWQI WWHYAQESVLSDVR  LKKTSWRYLG RL
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24740.1 Protein of unknown function (DUF1162)6.5e-0970.59Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSD
        RYGR+RP  + LSRK  GWQ  WWHYAQ SVLSD
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSD

AT5G24740.2 Protein of unknown function (DUF1162)1.2e-1568.63Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL
        RYGR+RP  + LSRK  GWQ  WWHYAQ SVLSDVRK L KTSWR+L  R+
Subjt:  RYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGGCTATATTTCACAGTGCACCTAATCTTTTATCGTGCAGATATGGAAGATTTCGCCCCTGGTGCTCTCCCCTGTCAAGGAAAGTCAAGGGTTGGCAAATATCATGGTG
GCATTACGCACAAGAATCTGTCTTGTCAGATGTACGAAAGAATTTAAAGAAAACTTCATGGAGATATCTTGGACACAGATTG
mRNA sequenceShow/hide mRNA sequence
AGGGCTATATTTCACAGTGCACCTAATCTTTTATCGTGCAGATATGGAAGATTTCGCCCCTGGTGCTCTCCCCTGTCAAGGAAAGTCAAGGGTTGGCAAATATCATGGTG
GCATTACGCACAAGAATCTGTCTTGTCAGATGTACGAAAGAATTTAAAGAAAACTTCATGGAGATATCTTGGACACAGATTG
Protein sequenceShow/hide protein sequence
RAIFHSAPNLLSCRYGRFRPWCSPLSRKVKGWQISWWHYAQESVLSDVRKNLKKTSWRYLGHRL