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MS006315 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006315
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold247:624206..624366
RNA-Seq ExpressionMS006315
SyntenyMS006315
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037472.1 U-box domain-containing protein 40 [Cucumis melo var. makuwa]4.0e-1484.48Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCNLAACFE RAALLDS AVECLVGM     LDSEST ESCVAVLFGLS GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

XP_022134051.1 U-box domain-containing protein 40 [Momordica charantia]3.6e-1586.21Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCNLAACFE RAALLDS AVECLVGM     LDSEST ESCVAVLFGLSHGGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

XP_022939780.1 U-box domain-containing protein 40 [Cucurbita moschata]4.0e-1482.76Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCNLAACFE RAALLDS AVECLVGM     LD+EST ESCVAVLFGLS+GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

XP_022993578.1 U-box domain-containing protein 40 [Cucurbita maxima]4.0e-1482.76Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCNLAACFE RAALLDS AVECLVGM     LD+EST ESCVAVLFGLS+GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

XP_038889155.1 U-box domain-containing protein 40 [Benincasa hispida]3.0e-1482.76Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCN+AACFE RAALLDS AVECLVGM     LDSEST ESCVAVLFGLS+GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

TrEMBL top hitse value%identityAlignment
A0A1S3C8I3 RING-type E3 ubiquitin transferase1.9e-1484.48Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCNLAACFE RAALLDS AVECLVGM     LDSEST ESCVAVLFGLS GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

A0A5A7T1Z7 RING-type E3 ubiquitin transferase1.9e-1484.48Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCNLAACFE RAALLDS AVECLVGM     LDSEST ESCVAVLFGLS GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

A0A6J1BWW5 RING-type E3 ubiquitin transferase1.7e-1586.21Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCNLAACFE RAALLDS AVECLVGM     LDSEST ESCVAVLFGLSHGGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

A0A6J1FNQ0 RING-type E3 ubiquitin transferase1.9e-1482.76Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCNLAACFE RAALLDS AVECLVGM     LD+EST ESCVAVLFGLS+GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

A0A6J1K2N7 RING-type E3 ubiquitin transferase1.9e-1482.76Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF
        LLILCNLAACFE RAALLDS AVECLVGM     LD+EST ESCVAVLFGLS+GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGM-----LDSESTAESCVAVLFGLSHGGLRF

SwissProt top hitse value%identityAlignment
Q0WUF6 U-box domain-containing protein 412.9e-0754.24Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGML------DSESTAESCVAVLFGLSHGGLRF
        LL+LCNLAAC + + A+LD +AV  LVG L      DSE+  E+CVAVL  L  G LRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGML------DSESTAESCVAVLFGLSHGGLRF

Q9FJP6 U-box domain-containing protein 383.7e-0749.23Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGML------------DSESTAESCVAVLFGLSHGGLRF
        LL++CNLA C E R+A+LD++AV  LVG L             S S  E+CVA LF LSH  LRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGML------------DSESTAESCVAVLFGLSHGGLRF

Q9FL17 U-box domain-containing protein 407.3e-1166.1Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGMLD-----SESTAESCVAVLFGLSH-GGLRF
        LLILCN+A+C  +R ALLDS  VEC+VG+L      +EST ESCVAVL+GLSH GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGMLD-----SESTAESCVAVLFGLSH-GGLRF

Q9STT1 U-box domain-containing protein 392.0e-0550Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGMLDSESTAES-------CVAVLFGLSHGGLRF
        LL+LCNLAAC E + A+LD +AV  LVG L     AES       CV  L  LS G +RF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGMLDSESTAES-------CVAVLFGLSHGGLRF

Arabidopsis top hitse value%identityAlignment
AT3G47820.1 PLANT U-BOX 391.5e-0650Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGMLDSESTAES-------CVAVLFGLSHGGLRF
        LL+LCNLAAC E + A+LD +AV  LVG L     AES       CV  L  LS G +RF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGMLDSESTAES-------CVAVLFGLSHGGLRF

AT5G40140.1 RING/U-box superfamily protein with ARM repeat domain5.2e-1266.1Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGMLD-----SESTAESCVAVLFGLSH-GGLRF
        LLILCN+A+C  +R ALLDS  VEC+VG+L      +EST ESCVAVL+GLSH GGLRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGMLD-----SESTAESCVAVLFGLSH-GGLRF

AT5G62560.1 RING/U-box superfamily protein with ARM repeat domain2.0e-0854.24Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGML------DSESTAESCVAVLFGLSHGGLRF
        LL+LCNLAAC + + A+LD +AV  LVG L      DSE+  E+CVAVL  L  G LRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGML------DSESTAESCVAVLFGLSHGGLRF

AT5G65200.1 plant U-box 382.7e-0849.23Show/hide
Query:  LLILCNLAACFEARAALLDSSAVECLVGML------------DSESTAESCVAVLFGLSHGGLRF
        LL++CNLA C E R+A+LD++AV  LVG L             S S  E+CVA LF LSH  LRF
Subjt:  LLILCNLAACFEARAALLDSSAVECLVGML------------DSESTAESCVAVLFGLSHGGLRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTTGATACTGTGCAATTTGGCAGCATGTTTCGAGGCTCGGGCGGCATTACTGGATTCCAGTGCAGTGGAATGTTTGGTGGGGATGTTGGACTCTGAGTCAACTGCGGA
GAGTTGCGTGGCGGTTTTGTTTGGACTGAGTCACGGCGGTTTGAGGTTC
mRNA sequenceShow/hide mRNA sequence
TTGTTGATACTGTGCAATTTGGCAGCATGTTTCGAGGCTCGGGCGGCATTACTGGATTCCAGTGCAGTGGAATGTTTGGTGGGGATGTTGGACTCTGAGTCAACTGCGGA
GAGTTGCGTGGCGGTTTTGTTTGGACTGAGTCACGGCGGTTTGAGGTTC
Protein sequenceShow/hide protein sequence
LLILCNLAACFEARAALLDSSAVECLVGMLDSESTAESCVAVLFGLSHGGLRF