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MS006330 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006330
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold123_1:136324..136494
RNA-Seq ExpressionMS006330
SyntenyMS006330
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEU97436.1 reverse transcriptase [Tanacetum cinerariifolium]8.9e-0450.91Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYL
        INFSKS ++FSPN   ++Q+ L S LGVRL++    YLGLPS     KG+ LS +
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYL
XP_022143493.1 uncharacterized protein LOC111013370 [Momordica charantia]2.0e-1166.67Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
        INF+KS L+FSPN+H  +Q FL SLL V LV DFGNY GLPSSF+ RKG+D  +LKD
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.1e-0966Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGK
        INFSKS LLFSPN+H ++Q +LQ +L V+LV  FGNYLGLPS FT R+G+
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGK
XP_024160415.1 uncharacterized protein LOC112167601 [Rosa chinensis]1.8e-0442.11Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
        +NF+KS+++FS N+H D Q ++ SLLGV +V+    YLGLP+    +K     Y+K+
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
XP_030479385.1 uncharacterized protein LOC115696632 [Cannabis sativa]3.1e-0442.11Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
        +N+SKS+L FSPN +++ ++ + S+LG+ +   F  YLGLP +F   K +  +YLKD
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
TrEMBL top hitse value%identityAlignment
A0A5B7AER2 Reverse transcriptase domain-containing protein5.6e-0443.86Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
        INF KS+L FSPN+ +DK+  ++ +LGV L      YLGLPS+    K +  +++KD
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
A0A6J1CQU9 uncharacterized protein LOC1110133709.6e-1266.67Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
        INF+KS L+FSPN+H  +Q FL SLL V LV DFGNY GLPSSF+ RKG+D  +LKD
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
A0A6J1DX30 uncharacterized protein LOC1110248745.3e-1066Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGK
        INFSKS LLFSPN+H ++Q +LQ +L V+LV  FGNYLGLPS FT R+G+
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGK
A0A803NNJ1 Uncharacterized protein7.4e-0442.11Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
        +N++KS+L FSPN  +D +  + S LG+ +   F  YLGLP SF   K +  +YL D
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
A0A803PYQ3 Uncharacterized protein5.6e-0442.11Show/hide
Query:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
        +NFSKS L FSPN  ++ Q  + ++LG+ +   F  YLGLP +F   K +  +Y+KD
Subjt:  INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAATTTCTCGAAATCGACTCTCTTGTTTTCTCCAAATATGCATAAAGACAAGCAATTGTTTCTTCAATCTTTACTTGGTGTTCGCTTGGTTCAAGATTTTGGGAATTA
CCTTGGCCTGCCTTCTTCATTTACTTGGCGAAAAGGAAAGGATTTGTCTTATTTAAAGGAT
mRNA sequenceShow/hide mRNA sequence
ATTAATTTCTCGAAATCGACTCTCTTGTTTTCTCCAAATATGCATAAAGACAAGCAATTGTTTCTTCAATCTTTACTTGGTGTTCGCTTGGTTCAAGATTTTGGGAATTA
CCTTGGCCTGCCTTCTTCATTTACTTGGCGAAAAGGAAAGGATTTGTCTTATTTAAAGGAT
Protein sequenceShow/hide protein sequence
INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD