CuGenDBv2

Gene ID	MS006339
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LysM domain-containing protein
Genome location	scaffold123_1:253560..255196
RNA-Seq Expression	MS006339
Synteny	MS006339
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022141745.1 uncharacterized protein LOC111012032 isoform X1 [Momordica charantia]

1.8e-75

97.37

Show/hide

Query:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
        IRD+YQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
Subjt:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD

Query:  SESSTDPS---SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
        SESSTDPS   SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
Subjt:  SESSTDPS---SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG

XP_022141746.1 uncharacterized protein LOC111012032 isoform X2 [Momordica charantia]

4.3e-77

99.33

Show/hide

Query:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
        IRD+YQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
Subjt:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD

Query:  SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
        SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
Subjt:  SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG

XP_022141747.1 uncharacterized protein LOC111012032 isoform X3 [Momordica charantia]

1.8e-75

97.37

Show/hide

Query:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
        IRD+YQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
Subjt:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD

Query:  SESSTDPS---SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
        SESSTDPS   SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
Subjt:  SESSTDPS---SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG

XP_038890844.1 uncharacterized protein LOC120080288 isoform X1 [Benincasa hispida]

1.7e-60

80.79

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Query:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
        IRD+YQL+EKLQS+LN L+NYKKLF   S  LPPARTTSFIVLVPLIVFCARCIIGASYARV  TS+L+T+DK EG+HHKFRSGHWRSALRDIRELDGLD
Subjt:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD

Query:  SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRGGS
         ES  D  SPS DEQIS EDLSH YKKLD+DYEKFLSECGLS  GYWRGG+
Subjt:  SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRGGS

XP_038890845.1 uncharacterized protein LOC120080288 isoform X2 [Benincasa hispida]

1.7e-60

80.79

Show/hide

Query:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
        IRD+YQL+EKLQS+LN L+NYKKLF   S  LPPARTTSFIVLVPLIVFCARCIIGASYARV  TS+L+T+DK EG+HHKFRSGHWRSALRDIRELDGLD
Subjt:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD

Query:  SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRGGS
         ES  D  SPS DEQIS EDLSH YKKLD+DYEKFLSECGLS  GYWRGG+
Subjt:  SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRGGS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CBV5 uncharacterized protein LOC103498697 isoform X2

6.8e-60

78.95

Show/hide

Query:  QIRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGL
        +IRD +QL+EKLQ++LNGLQ YKKLF   S RLPPARTTSFIVLVPL++FC RCIIGASYARV  T KLK I+K EGE HKFRSGHWRSALRDIRELDGL
Subjt:  QIRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGL

Query:  DSESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRGGS
        D E+  D +SPS DEQISVEDLSHAYKKLD+DYEKFLSECGLS  GYWRGG+
Subjt:  DSESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRGGS

A0A5A7T6Z4 LysM domain-containing protein

1.8e-60

79.61

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Query:  QIRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGL
        +IRD +QL+EKLQS+LNGLQ YKKLF   S RLPPARTTSFIVLVPL++FC RCIIGASYARV  T KLK I+K EGE HKFRSGHWRSALRDIRELDGL
Subjt:  QIRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGL

Query:  DSESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRGGS
        D E+  D +SPS DEQISVEDLSHAYKKLD+DYEKFLSECGLS  GYWRGG+
Subjt:  DSESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRGGS

A0A6J1CIZ2 uncharacterized protein LOC111012032 isoform X1

8.8e-76

97.37

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Query:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
        IRD+YQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
Subjt:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD

Query:  SESSTDPS---SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
        SESSTDPS   SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
Subjt:  SESSTDPS---SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG

A0A6J1CK58 uncharacterized protein LOC111012032 isoform X2

2.1e-77

99.33

Show/hide

Query:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
        IRD+YQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
Subjt:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD

Query:  SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
        SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
Subjt:  SESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG

A0A6J1CKQ6 uncharacterized protein LOC111012032 isoform X3

8.8e-76

97.37

Show/hide

Query:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
        IRD+YQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD
Subjt:  IRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLD

Query:  SESSTDPS---SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
        SESSTDPS   SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG
Subjt:  SESSTDPS---SPSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G09970.1 unknown protein

1.3e-07

33.33

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Query:  LVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRE---LDGLDSESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSEC
        L+P++ FC  CIIG  +  +S+ +       S+G HH   S  WR+AL D  E    DG DS S     + +  E  + ++++ AY +++ +Y++FL EC
Subjt:  LVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRE---LDGLDSESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSEC

Query:  GL
        G+
Subjt:  GL

AT4G09970.2 unknown protein

7.8e-08

33.33

Show/hide

Query:  LVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLDSESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGL
        L+P++ FC  CIIG  +  +S+ +       S+G HH   S  WR+AL D  E    D     D  SP   E  + ++++ AY +++ +Y++FL ECG+
Subjt:  LVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLDSESSTDPSSPSVDEQISVEDLSHAYKKLDKDYEKFLSECGL

Sequences

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CDS sequence

Show/hide CDS sequence

CAGATTAGAGATATATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTAAATGGACTTCAGAACTATAAAAAGCTTTTCTTGCACGTCTCCCCTCGTCTACCTCCTGCTAG
AACCACTAGTTTTATAGTTTTGGTTCCTCTTATAGTATTTTGTGCCAGATGCATAATTGGTGCTTCTTATGCTAGAGTTTCCAAAACATCAAAGCTTAAAACTATTGATA
AATCAGAGGGAGAGCATCACAAGTTTAGAAGCGGGCATTGGAGATCTGCTCTCCGCGATATAAGGGAACTAGATGGTTTGGATTCTGAGTCATCCACAGATCCTTCTAGT
CCTTCGGTAGATGAACAGATTTCAGTTGAAGATTTGTCACATGCTTACAAGAAACTGGACAAGGACTACGAAAAGTTTCTATCAGAATGTGGACTGAGTAATTGCGGCTA
CTGGCGTGGGGGTTCCCCGAGTCAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

QIRDIYQLQEKLQSSLNGLQNYKKLFLHVSPRLPPARTTSFIVLVPLIVFCARCIIGASYARVSKTSKLKTIDKSEGEHHKFRSGHWRSALRDIRELDGLDSESSTDPSS
PSVDEQISVEDLSHAYKKLDKDYEKFLSECGLSNCGYWRGGSPSQ

MS006339 (gene) of Bitter gourd (TR) v1 genome