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MS006354 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006354
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCLAVATA3/ESR-RELATED 7
Genome locationscaffold327:73811..74086
RNA-Seq ExpressionMS006354
SyntenyMS006354
Gene Ontology termsGO:0045168 - cell-cell signaling involved in cell fate commitment (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061638.1 hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa]1.1e-1965.91Show/hide
Query:  NPKLAPLVAVLFMLMLVSAVAGRHAPPPP--LSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP
        N  LAPL+AVLFM+MLV+A A RHA   P  + EAT+  SSS  +++RK GYSK QMEH RRL S+S  RY PGGPDSQHHSQPPRLP
Subjt:  NPKLAPLVAVLFMLMLVSAVAGRHAPPPP--LSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP

KAE8647339.1 hypothetical protein Csa_003556, partial [Cucumis sativus]9.6e-1662.07Show/hide
Query:  FNPKLA-PLVAVLFMLMLVSAVAGRHAPPP--PLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPP
        FN  LA PL+AVLFM MLV+A    HA      + EAT+  SSSS +++RK GYSK QMEH RRL S+S +RY PGGPDSQHHSQPP
Subjt:  FNPKLA-PLVAVLFMLMLVSAVAGRHAPPP--PLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPP

KAG6572409.1 hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sororia]4.2e-1961.7Show/hide
Query:  FNPKLAPLVAVLFMLMLVSAVAGRHAPPPPLSEATQI-------SSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP
        FNPK APL AV+FM+MLV+A AGRHA P    EA  I       SSSSS +++R+LGY+K+QMEH RRL S+S  RY PGGPDSQHHS+ PR P
Subjt:  FNPKLAPLVAVLFMLMLVSAVAGRHAPPPPLSEATQI-------SSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP

KAG6589262.1 hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sororia]2.6e-2165.22Show/hide
Query:  MASRGFNPKLAPLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP
        MA+  F+ KLAP +AVLF+ ML+  VAGRHA PP  +E     SSSSI+++RK GYSKTQMEH +RL S+S +RYTPGGPDSQHHS PPRLP
Subjt:  MASRGFNPKLAPLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP

MBA0739247.1 hypothetical protein [Gossypium gossypioides]3.4e-0548.98Show/hide
Query:  SSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQPPRLP
        SS ++LRKLGY + ++EH+R++++     DR +PGGPD +HH+ PPR+P
Subjt:  SSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQPPRLP

TrEMBL top hitse value%identityAlignment
A0A0A0KGI4 Uncharacterized protein6.5e-1863.33Show/hide
Query:  FNPKLA-PLVAVLFMLMLVSAVAGRHAPPP--PLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP
        FN  LA PL+AVLFM MLV+A    HA      + EAT+  SSSS +++RK GYSK QMEH RRL S+S +RY PGGPDSQHHSQPPRLP
Subjt:  FNPKLA-PLVAVLFMLMLVSAVAGRHAPPP--PLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP

A0A2P5YW95 Uncharacterized protein4.8e-0546.94Show/hide
Query:  SSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQPPRLP
        SS ++LR+LGY + ++EH+R++++     DR +PGGPD +HH+ PPR+P
Subjt:  SSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQPPRLP

A0A5D2TG78 Uncharacterized protein4.8e-0546.94Show/hide
Query:  SSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQPPRLP
        SS ++LR+LGY + ++EH+R++++     DR +PGGPD +HH+ PPR+P
Subjt:  SSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQPPRLP

A0A5D3C664 Uncharacterized protein5.3e-2065.91Show/hide
Query:  NPKLAPLVAVLFMLMLVSAVAGRHAPPPP--LSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP
        N  LAPL+AVLFM+MLV+A A RHA   P  + EAT+  SSS  +++RK GYSK QMEH RRL S+S  RY PGGPDSQHHSQPPRLP
Subjt:  NPKLAPLVAVLFMLMLVSAVAGRHAPPPP--LSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP

A0A7J9BSX3 Uncharacterized protein1.7e-0548.98Show/hide
Query:  SSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQPPRLP
        SS ++LRKLGY + ++EH+R++++     DR +PGGPD +HH+ PPR+P
Subjt:  SSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQPPRLP

SwissProt top hitse value%identityAlignment
Q8S8N1 CLAVATA3/ESR (CLE)-related protein 76.7e-0435Show/hide
Query:  APLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQP
        A L+ V+   +LV  + GR      L   ++     S  +L++LGY+ ++++   R  S  N +DR++PGGPD QHHS P
Subjt:  APLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQP

Arabidopsis top hitse value%identityAlignment
AT2G31082.1 CLAVATA3/ESR-RELATED 74.8e-0535Show/hide
Query:  APLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQP
        A L+ V+   +LV  + GR      L   ++     S  +L++LGY+ ++++   R  S  N +DR++PGGPD QHHS P
Subjt:  APLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYS--NSIDRYTPGGPDSQHHSQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGCCGTGGTTTTAACCCAAAACTTGCTCCATTGGTGGCAGTCCTTTTCATGCTCATGCTTGTCTCAGCCGTGGCCGGCCGCCATGCACCGCCGCCGCCACTGTC
GGAGGCCACCCAAATCAGCAGCAGCAGCAGCATTATAATGCTGCGTAAATTGGGTTATAGCAAAACCCAAATGGAGCATTTTAGACGACTTTATTCAAATTCCATCGACA
GATACACACCCGGAGGGCCTGATTCTCAGCACCATTCTCAGCCCCCTCGCCTCCCA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGCCGTGGTTTTAACCCAAAACTTGCTCCATTGGTGGCAGTCCTTTTCATGCTCATGCTTGTCTCAGCCGTGGCCGGCCGCCATGCACCGCCGCCGCCACTGTC
GGAGGCCACCCAAATCAGCAGCAGCAGCAGCATTATAATGCTGCGTAAATTGGGTTATAGCAAAACCCAAATGGAGCATTTTAGACGACTTTATTCAAATTCCATCGACA
GATACACACCCGGAGGGCCTGATTCTCAGCACCATTCTCAGCCCCCTCGCCTCCCA
Protein sequenceShow/hide protein sequence
MASRGFNPKLAPLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP