; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006366 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006366
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold327:139909..140406
RNA-Seq ExpressionMS006366
SyntenyMS006366
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061653.1 zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa]3.2e-7888.82Show/hide
Query:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE
        M+R NRGRRW +LKQRLGLKGMGCC GSWSPTSSTLTMIEG  LS HGSSR  RED  RSSAASGMNLAMALAAERNLR DEGGP GA DVKSLMRLFEE
Subjt:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE

Query:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        MDG DWKTKRKEGENNG DWMCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPIC+RSIIEILDIF
Subjt:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

KAG6589274.1 hypothetical protein SDJN03_17839, partial [Cucurbita argyrosperma subsp. sororia]7.2e-7082.46Show/hide
Query:  MDRPNRGRRWTSLKQRLGL-KGMGCCGGSWSPTSSTLTMIE--GLSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFE
        M+RPNRG+RW +LKQRLGL KGMGCCGGSWS TSSTLTMI+  GLSRHGSSR  R+D  RSSAASGMNLAMALAAERNL  +EGGP   G+VKSLMRLFE
Subjt:  MDRPNRGRRWTSLKQRLGL-KGMGCCGGSWSPTSSTLTMIE--GLSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFE

Query:  EMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        E+DG DWKT+RKE ENNG DW+CCVCMERSKGAAFIPCGH FCRVCSRELWLN GTCPIC+RSIIEILDIF
Subjt:  EMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

KGN47968.1 hypothetical protein Csa_002927 [Cucumis sativus]1.1e-7586.47Show/hide
Query:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSRR--EDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE
        M+R NR RRWT+L+QRLGLKGMGCC GSWSPTSSTLTMIEG  LS HGSSR   ED  RSSAASGMNLAMALAAERNLR DEGGP G  DVKSLMRLFEE
Subjt:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSRR--EDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE

Query:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        MDG DWKTKRKE ENNG DWMCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPIC+RSIIEILDIF
Subjt:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

XP_022953088.1 RNA-binding protein MEX3B-like [Cucurbita moschata]1.9e-7888.82Show/hide
Query:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE
        M+R N GRRW +LKQRLGLKGMGCCGGSWSPTSSTLTMIEG  LSRHGSSR  RED ARSSA+SG+NLAMALAAERNLR DEGGP GAGDVKSLMRLFEE
Subjt:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE

Query:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        MDG DWKTKRKE EN G DWMCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPICNRSIIEILDIF
Subjt:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

XP_023531397.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo]7.2e-7082.46Show/hide
Query:  MDRPNRGRRWTSLKQRLGL-KGMGCCGGSWSPTSSTLTMIE--GLSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFE
        M+RPNRG+RW +LKQRLGL KGMGCCGGSWS TSSTLTMI+  GLSRHGSSR  R+D  RSSAASGMNLAMALAAERNL  +EGGP   G+VKSLMRLFE
Subjt:  MDRPNRGRRWTSLKQRLGL-KGMGCCGGSWSPTSSTLTMIE--GLSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFE

Query:  EMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        E+DG DWKT+RKE ENNG DW+CCVCMERSKGAAFIPCGH FCRVCSRELWLN GTCPIC+RSIIEILDIF
Subjt:  EMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

TrEMBL top hitse value%identityAlignment
A0A0A0KEL6 RING-type domain-containing protein5.5e-7686.47Show/hide
Query:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSRR--EDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE
        M+R NR RRWT+L+QRLGLKGMGCC GSWSPTSSTLTMIEG  LS HGSSR   ED  RSSAASGMNLAMALAAERNLR DEGGP G  DVKSLMRLFEE
Subjt:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSRR--EDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE

Query:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        MDG DWKTKRKE ENNG DWMCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPIC+RSIIEILDIF
Subjt:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

A0A5A7V0I3 Zf-C3HC4_3 domain-containing protein1.6e-7888.82Show/hide
Query:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE
        M+R NRGRRW +LKQRLGLKGMGCC GSWSPTSSTLTMIEG  LS HGSSR  RED  RSSAASGMNLAMALAAERNLR DEGGP GA DVKSLMRLFEE
Subjt:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE

Query:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        MDG DWKTKRKEGENNG DWMCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPIC+RSIIEILDIF
Subjt:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

A0A6J1D257 baculoviral IAP repeat-containing protein 7-like1.9e-68100Show/hide
Query:  MIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAF
        MIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAF
Subjt:  MIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAF

Query:  CRVCSRELWLNRGTCPICNRSIIEILDIF
        CRVCSRELWLNRGTCPICNRSIIEILDIF
Subjt:  CRVCSRELWLNRGTCPICNRSIIEILDIF

A0A6J1GME5 RNA-binding protein MEX3B-like9.1e-7988.82Show/hide
Query:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE
        M+R N GRRW +LKQRLGLKGMGCCGGSWSPTSSTLTMIEG  LSRHGSSR  RED ARSSA+SG+NLAMALAAERNLR DEGGP GAGDVKSLMRLFEE
Subjt:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE

Query:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        MDG DWKTKRKE EN G DWMCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPICNRSIIEILDIF
Subjt:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

A0A6J1HXI8 RNA-binding protein MEX3B-like9.1e-7988.82Show/hide
Query:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE
        M+R N GRRW +LKQRLGLKGMGCCGGSWSPTSSTLTMIEG  LSRHGSSR  RED ARSSA+SG+NLAMALAAERNLR DEGGP GAGDVKSLMRLFEE
Subjt:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEE

Query:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        MDG DWKTKRKE EN G DWMCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPICNRSIIEILDIF
Subjt:  MDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G62370.1 RING/U-box superfamily protein2.1e-2742.44Show/hide
Query:  RWTSLKQRLGLKGMGCCGGSWS---PTSSTLTMIEGLSRHGSSRREDAARSSAASG-----------MNLAMALAAERNLRGDEGGPAGAGDVKSLMRLF
        +WT+LKQRL    +GCCG   +     + T  +++       S+ +    S   +G            NLA ALA ER     E     A     LMRL 
Subjt:  RWTSLKQRLGLKGMGCCGGSWS---PTSSTLTMIEGLSRHGSSRREDAARSSAASG-----------MNLAMALAAERNLRGDEGGPAGAGDVKSLMRLF

Query:  EEMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
         E DG D  T        G D +CCVCM R KGAAFIPCGH +CRVCSRE+W+NRGTCP+CNRSI ++LD++
Subjt:  EEMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

AT3G25030.1 RING/U-box superfamily protein2.8e-2439.27Show/hide
Query:  MDRPNRGRR----WTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG-----------LSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAG
        M R +R  R    W SL+++L LK  G    S +   S  T I             LS  G+   E    SS    + L   LA ER L   E       
Subjt:  MDRPNRGRR----WTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG-----------LSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAG

Query:  DVK----SLMRLFEEMDG------VDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        +V+    SLM L EE +G      VD + + +       +  CCVCM RSKGAAFIPCGH FCR+CSRELW+ RG CP+CN +I+E+LD+F
Subjt:  DVK----SLMRLFEEMDG------VDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

AT3G25030.2 RING/U-box superfamily protein2.8e-2439.27Show/hide
Query:  MDRPNRGRR----WTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG-----------LSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAG
        M R +R  R    W SL+++L LK  G    S +   S  T I             LS  G+   E    SS    + L   LA ER L   E       
Subjt:  MDRPNRGRR----WTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG-----------LSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAG

Query:  DVK----SLMRLFEEMDG------VDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        +V+    SLM L EE +G      VD + + +       +  CCVCM RSKGAAFIPCGH FCR+CSRELW+ RG CP+CN +I+E+LD+F
Subjt:  DVK----SLMRLFEEMDG------VDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

AT4G03965.1 RING/U-box superfamily protein9.7e-3348.33Show/hide
Query:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWS--PTSSTLTMIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGA-GDVK-SLMRLFEE
        +DR  R +R  +LK+RLG K +GCCG +W    TS+T    +    +      D        GMNLA ALAAERN R +E   +G+   +K SLMRL EE
Subjt:  MDRPNRGRRWTSLKQRLGLKGMGCCGGSWS--PTSSTLTMIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGA-GDVK-SLMRLFEE

Query:  M--------DGVDWKTKRKEGENNGV--DWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
                 +  +  T        GV  D +CCVCM R KGAAFIPCGH FCRVCSRE+WLNRG+CP+CNR IIEILDI+
Subjt:  M--------DGVDWKTKRKEGENNGV--DWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

AT4G22250.1 RING/U-box superfamily protein2.8e-3247.25Show/hide
Query:  RRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSRHGSSRREDAARS-------------SAASGMNLAMALAAERNLRGD--EGGPAGAGDVKSLMR
        RR  +LK+RL  K +GCCG +W+     L +    + H  + R+D                  + +GMNLA AL AER  RG+  E          SLMR
Subjt:  RRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSRHGSSRREDAARS-------------SAASGMNLAMALAAERNLRGD--EGGPAGAGDVKSLMR

Query:  LFEEMDG--VDWKTKRKE------GENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF
        L EE     VD   K  E      G   G D +CCVCM R KGAAFIPCGH FCRVCSRELWLNRG+CP+CNR IIEILDIF
Subjt:  LFEEMDG--VDWKTKRKE------GENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCGGCCAAATCGAGGGCGGAGATGGACCAGTTTGAAGCAACGGCTGGGATTGAAGGGAATGGGGTGCTGTGGGGGTTCATGGAGTCCAACATCGTCGACTTTGAC
GATGATTGAAGGCTTGAGCCGCCATGGGAGCAGCCGCAGAGAGGACGCGGCTCGGAGCTCTGCAGCTTCCGGCATGAACCTGGCCATGGCCCTGGCGGCGGAGCGAAATT
TGCGGGGCGATGAAGGGGGCCCCGCCGGCGCCGGCGATGTGAAATCGTTGATGAGATTGTTCGAAGAAATGGACGGTGTGGATTGGAAGACAAAAAGAAAGGAGGGGGAG
AATAACGGTGTGGATTGGATGTGCTGCGTGTGCATGGAGAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACGCCTTCTGTAGGGTATGTTCTAGGGAATTATGGCT
CAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTT
mRNA sequenceShow/hide mRNA sequence
ATGGACCGGCCAAATCGAGGGCGGAGATGGACCAGTTTGAAGCAACGGCTGGGATTGAAGGGAATGGGGTGCTGTGGGGGTTCATGGAGTCCAACATCGTCGACTTTGAC
GATGATTGAAGGCTTGAGCCGCCATGGGAGCAGCCGCAGAGAGGACGCGGCTCGGAGCTCTGCAGCTTCCGGCATGAACCTGGCCATGGCCCTGGCGGCGGAGCGAAATT
TGCGGGGCGATGAAGGGGGCCCCGCCGGCGCCGGCGATGTGAAATCGTTGATGAGATTGTTCGAAGAAATGGACGGTGTGGATTGGAAGACAAAAAGAAAGGAGGGGGAG
AATAACGGTGTGGATTGGATGTGCTGCGTGTGCATGGAGAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACGCCTTCTGTAGGGTATGTTCTAGGGAATTATGGCT
CAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTT
Protein sequenceShow/hide protein sequence
MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGE
NNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF