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MS006377 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006377
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L22, chloroplastic
Genome locationscaffold327:203949..204218
RNA-Seq ExpressionMS006377
SyntenyMS006377
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001063 - Ribosomal protein L22/L17
IPR005727 - Ribosomal protein L22, bacterial/chloroplast-type
IPR036394 - Ribosomal protein L22/L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AXU40433.1 ribosomal protein L22 [Gomphogyne cissiformis var. villosa]9.7e-3795.24Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

YP_009526341.1 ribosomal protein L22 [Hemsleya lijiangensis]9.7e-3795.24Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

YP_009752959.1 ribosomal protein L22 [Momordica sessilifolia]8.2e-3694.05Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACY ILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

YP_009753297.1 ribosomal protein L22 [Nothoalsomitra suberosa]3.7e-3694.05Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IKKNRYTEVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

YP_010119773.1 ribosomal protein L22 [Hemsleya zhejiangensis]9.7e-3795.24Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

TrEMBL top hitse value%identityAlignment
A0A346TM43 50S ribosomal protein L22, chloroplastic4.7e-3795.24Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

A0A346TMD0 50S ribosomal protein L22, chloroplastic4.7e-3795.24Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

A0A6H0ERD1 50S ribosomal protein L22, chloroplastic4.0e-3692.86Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IK+NRYTEVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

A0A6H0EXV8 50S ribosomal protein L22, chloroplastic1.8e-3694.05Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IKKNRYTEVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

A0A7D5C2Q7 50S ribosomal protein L22, chloroplastic4.0e-3692.86Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IK+NRYTEVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ERNLVISKAEVNK
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

SwissProt top hitse value%identityAlignment
A6MM76 50S ribosomal protein L22, chloroplastic1.6e-3485.71Show/hide
Query:  MIKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVN
        MIKKNR  EVYA GQHICMSAHKARRVIDQIRGRSYEE +MILELMPY ACYPI KLVYS AANASHNMGF+E + VISKAEVN
Subjt:  MIKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVN

B1NWI9 50S ribosomal protein L22, chloroplastic3.0e-3381.93Show/hide
Query:  KKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        K+N Y EVYA GQHICMS HKARR+IDQIRGRSYEET+MILELMPY ACYPI KL+YS AANASHNMGF+E NL+ISKAEVN+
Subjt:  KKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

Q09G06 50S ribosomal protein L22, chloroplastic5.5e-3585.71Show/hide
Query:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        IKKN  TEVYA GQHICMSAHKARRVIDQIRGRSYEET+MILELMPY ACYPI KLVYS AANASHNMGF+E +L+ISKAEVN+
Subjt:  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

Q49KV9 50S ribosomal protein L22, chloroplastic3.0e-3385.37Show/hide
Query:  KNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        KN Y EVYA GQHI MSAHKARRVIDQIRGRSYEET+MILELMPY ACYPI KLVYS AANASHNMGF+E +LVISKAEVN+
Subjt:  KNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

Q4VZM9 50S ribosomal protein L22, chloroplastic1.4e-3590.36Show/hide
Query:  KKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        KKNRY EVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS AANASHNMGF+ER+LVISKAEVN+
Subjt:  KKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

Arabidopsis top hitse value%identityAlignment
ATCG00810.1 ribosomal protein L224.0e-3381.93Show/hide
Query:  KKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK
        KK  YTEVYA GQ+I MSAHKARRVIDQIRGRSYEE +MILELMPY  CYPI KLVYS AANASHN GF E NLVISKAEVN+
Subjt:  KKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTCAAACACGCTTAATGATAAAAAAGAATCGATATACAGAAGTATACGCTTTTGGTCAACATATATGTATGTCCGCTCACAAAGCACGAAGAGTAATTGATCAGATTCG
GGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCACGCATGTTATCCAATTTTAAAATTGGTTTATTCGACAGCAGCAAATGCTAGTCACAATA
TGGGTTTCCACGAAAGAAATTTAGTCATTAGTAAAGCGGAAGTCAACAAA
mRNA sequenceShow/hide mRNA sequence
AGTCAAACACGCTTAATGATAAAAAAGAATCGATATACAGAAGTATACGCTTTTGGTCAACATATATGTATGTCCGCTCACAAAGCACGAAGAGTAATTGATCAGATTCG
GGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCACGCATGTTATCCAATTTTAAAATTGGTTTATTCGACAGCAGCAAATGCTAGTCACAATA
TGGGTTTCCACGAAAGAAATTTAGTCATTAGTAAAGCGGAAGTCAACAAA
Protein sequenceShow/hide protein sequence
SQTRLMIKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK