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MS006410 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006410
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncysteine-rich and transmembrane domain-containing protein B-like
Genome locationscaffold327:420410..420776
RNA-Seq ExpressionMS006410
SyntenyMS006410
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044850 - Cysteine-rich and transmembrane domain-containing protein WIH1/2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646099.1 hypothetical protein Csa_015748 [Cucumis sativus]1.8e-2255.12Show/hide
Query:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD---FKIKPFIIFTKL-
        N  I++ YPAPPPSY A EQ K    GPYV APPPVGYPV+D P +YPHQT   +QTQSRGDGFWKGW VSL+ I+F   F  +   + +K  +   KL 
Subjt:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD---FKIKPFIIFTKL-

Query:  WFFFFFFLLVAALPCVAAGYWIASSDK
        W      + VA L CVAAGYWI S D+
Subjt:  WFFFFFFLLVAALPCVAAGYWIASSDK
KAG7023002.1 hypothetical protein SDJN02_16738, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-1770Show/hide
Query:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQ--TSQTQSRGDGFWKGWSVS
        + +I +AYPAPPPSYPA E+ K    GPYV APPPVGYPV+D P +YPHQ  T QTQS+GDGFWKGWSVS
Subjt:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQ--TSQTQSRGDGFWKGWSVS
XP_011659032.1 cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus]4.8e-1559.52Show/hide
Query:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD
        N  I++ YPAPPPSY A EQ K    GPYV APPPVGYPV+D P +YPHQT   +QTQSRGDGFWKG   +L     C  + LD
Subjt:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD
XP_022148046.1 cysteine-rich and transmembrane domain-containing protein B-like [Momordica charantia]3.3e-2479.73Show/hide
Query:  IAVAYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKDAPVEYPHQTSQTQSRGDGFWKGWSVSLSLINFCTIFALD
        I +AYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKDAPVEYPHQTSQTQSRGDGFWKG   +L     C  + LD
Subjt:  IAVAYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKDAPVEYPHQTSQTQSRGDGFWKGWSVSLSLINFCTIFALD
XP_022989101.1 cysteine-rich and transmembrane domain-containing protein B-like isoform X1 [Cucurbita maxima]2.2e-1562.5Show/hide
Query:  IAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQ--TSQTQSRGDGFWKGWSVSLSLINFCTIFALD
        +AVAYPAPPPSYPA E+ K    GPYV APPPVGYPV+D P +YPHQ  T QTQS+GDGFWKG   +L     C  + LD
Subjt:  IAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQ--TSQTQSRGDGFWKGWSVSLSLINFCTIFALD
TrEMBL top hitse value%identityAlignment
A0A0A0K5N8 CYSTM domain-containing protein2.3e-1559.52Show/hide
Query:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD
        N  I++ YPAPPPSY A EQ K    GPYV APPPVGYPV+D P +YPHQT   +QTQSRGDGFWKG   +L     C  + LD
Subjt:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD
A0A1S3BHK1 cysteine-rich and transmembrane domain-containing protein A-like5.2e-1559.52Show/hide
Query:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD
        N  I + YPAPPPSY A EQ K    GPYV APPPVGYPV+D P +YPHQT   +QTQSRGDGFWKG   +L     C  + LD
Subjt:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD
A0A5A7USJ3 Cysteine-rich and transmembrane domain-containing protein A-like5.2e-1559.52Show/hide
Query:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD
        N  I + YPAPPPSY A EQ K    GPYV APPPVGYPV+D P +YPHQT   +QTQSRGDGFWKG   +L     C  + LD
Subjt:  NDRIAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQT---SQTQSRGDGFWKGWSVSLSLINFCTIFALD
A0A6J1D469 cysteine-rich and transmembrane domain-containing protein B-like1.6e-2479.73Show/hide
Query:  IAVAYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKDAPVEYPHQTSQTQSRGDGFWKGWSVSLSLINFCTIFALD
        I +AYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKDAPVEYPHQTSQTQSRGDGFWKG   +L     C  + LD
Subjt:  IAVAYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKDAPVEYPHQTSQTQSRGDGFWKGWSVSLSLINFCTIFALD
A0A6J1JJ37 cysteine-rich and transmembrane domain-containing protein B-like isoform X11.0e-1562.5Show/hide
Query:  IAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQ--TSQTQSRGDGFWKGWSVSLSLINFCTIFALD
        +AVAYPAPPPSYPA E+ K    GPYV APPPVGYPV+D P +YPHQ  T QTQS+GDGFWKG   +L     C  + LD
Subjt:  IAVAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPVKDAPVEYPHQ--TSQTQSRGDGFWKGWSVSLSLINFCTIFALD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G32190.2 unknown protein1.3e-0547.06Show/hide
Query:  AYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKD------APVEYPHQTSQTQSRGDGFWKGWSVSLSLI
        AYP PP S        GPY+T PPP+GYP  D      APVE       T+S+GDGF KGW V   L+
Subjt:  AYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKD------APVEYPHQTSQTQSRGDGFWKGWSVSLSLI
AT3G22240.1 unknown protein4.3e-0658.97Show/hide
Query:  GPYVTAPPPVGYPVKDAPV-EYPHQTSQTQSRGDGFWKG
        GPY T+PPP+GYP +DA V + P    +T+S+GDGFWKG
Subjt:  GPYVTAPPPVGYPVKDAPV-EYPHQTSQTQSRGDGFWKG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGATTAATAAAATGAACGACCGAATTGCAGTGGCGTACCCGGCGCCTCCTCCGTCGTATCCGGCGGCGGAGCAATTTAAGGGTCCTTATGTGACGGCTCCGCCGCCCGT
TGGGTATCCGGTGAAGGACGCTCCTGTTGAGTACCCTCACCAAACTTCCCAAACTCAATCCAGAGGAGATGGCTTCTGGAAAGGATGGTCAGTATCTCTCTCTCTGATCA
ACTTTTGTACAATATTTGCCCTAGATTTTAAAATTAAACCGTTTATCATATTTACTAAATTATGGTTTTTTTTTTTTTTTTTTCTCCTTGTAGCTGCGCTGCCCTGTGTT
GCTGCTGGGTATTGGATTGCGTCTTCTGATAAA
mRNA sequenceShow/hide mRNA sequence
GTGATTAATAAAATGAACGACCGAATTGCAGTGGCGTACCCGGCGCCTCCTCCGTCGTATCCGGCGGCGGAGCAATTTAAGGGTCCTTATGTGACGGCTCCGCCGCCCGT
TGGGTATCCGGTGAAGGACGCTCCTGTTGAGTACCCTCACCAAACTTCCCAAACTCAATCCAGAGGAGATGGCTTCTGGAAAGGATGGTCAGTATCTCTCTCTCTGATCA
ACTTTTGTACAATATTTGCCCTAGATTTTAAAATTAAACCGTTTATCATATTTACTAAATTATGGTTTTTTTTTTTTTTTTTTCTCCTTGTAGCTGCGCTGCCCTGTGTT
GCTGCTGGGTATTGGATTGCGTCTTCTGATAAA
Protein sequenceShow/hide protein sequence
VINKMNDRIAVAYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKDAPVEYPHQTSQTQSRGDGFWKGWSVSLSLINFCTIFALDFKIKPFIIFTKLWFFFFFFLLVAALPCV
AAGYWIASSDK