; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006412 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006412
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionKRR1 small subunit processome component
Genome locationscaffold327:435639..440307
RNA-Seq ExpressionMS006412
SyntenyMS006412
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR024166 - Ribosomal RNA assembly KRR1
IPR036612 - K Homology domain, type 1 superfamily
IPR041174 - Krr1, KH1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012057.1 mis3 [Cucurbita argyrosperma subsp. argyrosperma]4.9e-16985.22Show/hide
Query:  VEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPY
        +EQQQ K KHKGKHDKPKPWDEDPNIDRWKV+KFDPSWNEGGMLEVSSFSTLFP YR K  + AWP+VKSALKEFG+AC+LNLVEGSMTVSTTRKT+DPY
Subjt:  VEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPY

Query:  IIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCML
        IIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLV K                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE+CM+
Subjt:  IIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCML

Query:  NKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAE
        NKMHP     ILMMKKELANDPALANENWDRFLPKFK+K VKQKK KSK+KKPYTPFPPPQ PS+IDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAE
Subjt:  NKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAE

Query:  NKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK
        NKRKREAAFVPPKEPPKQDT  DGDNNDIATMAKALKEKAKALGKRKAAE+IN E+YIASSS+Q HFKK+SK
Subjt:  NKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK

XP_022148021.1 KRR1 small subunit processome component [Momordica charantia]2.1e-18391.76Show/hide
Query:  YADVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTR
        Y DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYR K  ++AWPIVKSALKEF VACELNLVEGSMTVSTTRKTR
Subjt:  YADVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTR

Query:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED
        DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED
Subjt:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED

Query:  CMLNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEK
        CMLNKMHP     ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEK
Subjt:  CMLNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEK

Query:  TAENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT
        TAENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT
Subjt:  TAENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT

XP_022952886.1 KRR1 small subunit processome component homolog [Cucurbita moschata]4.9e-16984.99Show/hide
Query:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP
        ++EQQQ K KHKGKHDKPKPWDEDPNIDRWKV+KFD SWNEGGMLEVSSFSTLFP YR K  + AWP+VKSALKEFG+AC+LNLVEGSMTVSTTRKT+DP
Subjt:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP

Query:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM
        YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLV K                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE+CM
Subjt:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM

Query:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
        +NKMHP     ILMMKKELANDPALANENWDRFLPKFK+KTVKQKK KSK+KKPYTPFPPPQ PS+IDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
Subjt:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA

Query:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK
        ENKRKREAAFVPPKEPPKQDT  DGDNNDIATMAKALKEKAKALGKRKAAE+IN E+YIASSS+Q HFKK+SK
Subjt:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK

XP_023511730.1 KRR1 small subunit processome component homolog [Cucurbita pepo subsp. pepo]2.9e-16985.25Show/hide
Query:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP
        ++EQQQ K KHKGKHDKPKPWDEDPNIDRW V+KFDPSWNEGGMLEVSSFSTLFP YR K  + AWP+VKSALKEFG+ACELNLVEGSMTVSTTRKT+DP
Subjt:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP

Query:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM
        YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLV K                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE+CM
Subjt:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM

Query:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
        +NKMHP     ILMMKKELANDPALANENWDRFLPKFK+KTVKQKK KSK+KKPYTPFPPPQ PS+IDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
Subjt:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA

Query:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK
        ENKRKREAAFVPPKEPPKQDT  DGDNNDIATMAKALKEKAKALGKRKAAE+IN E+YIASSS+Q HFKK+SK
Subjt:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK

XP_038888683.1 KRR1 small subunit processome component homolog [Benincasa hispida]1.9e-16883.69Show/hide
Query:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP
        D+EQQQ K KHKGKHDKPKPWDEDPNIDRWKV+KFDPSWNEGGMLEVSSFSTLFP YR K  R+ WP+VKSALKEFG+ CELNL+EGSMTVSTTRKTRDP
Subjt:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP

Query:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM
        YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLV K                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRR+VE+CM
Subjt:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM

Query:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
        +NKMHP     ILMMKKELANDPALANENWDRFLPKFK+KTVKQKK KSK+KKPYTPFPPPQQPS+IDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKTA
Subjt:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA

Query:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT
        ENKRKREAAFVPPKEPP QDT+ D DNNDI+ MAKALKEKAKA GKRKA E IN E+YIASSS++PHFKK+SKT
Subjt:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT

TrEMBL top hitse value%identityAlignment
A0A0A0K7G6 KRR1 small subunit processome component1.3e-16282.13Show/hide
Query:  DVEQQ-QGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRD
        D+EQQ Q K KHKGKHDKPKPWDEDPNIDRWKV+KFDPSWNE GMLEVSSFSTLFP YR K  R  WP+VKSALKEFG+  ELNL+EGSMTVSTTRKTRD
Subjt:  DVEQQ-QGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRD

Query:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC
        PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLV K                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRR+VE+C
Subjt:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC

Query:  MLNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKT
        M+NKMHP     ILMM+KELANDPALANENWDRFLPKFK+KTVKQKK KSK KK YTPFPPPQQPS+IDIQLETGEYFL++KKKSAKKWQ+KQEKQAEKT
Subjt:  MLNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKT

Query:  AENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT
        A+NKRKREAAFVPPKE PKQDTK DGD NDIA MAK+LKEKAKA GKRKAAETIN E+YIASSS++P FKK+SKT
Subjt:  AENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT

A0A5D3CP78 KRR1 small subunit processome component1.1e-16382.93Show/hide
Query:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP
        D+EQQQ K KHKGKHDKPKPWDEDPNIDRWKV+KFDPSWNE GMLEVSSFSTLFP YR K  R  WP+VKSALKEFG+  ELNL+EGSMTVSTTRKTRDP
Subjt:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP

Query:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM
        YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLV K                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRR+VE+CM
Subjt:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM

Query:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
        +NKMHP     ILMMKKELANDPALANENWDRFLPKFK+KTVKQKK KSK KK YTPFPPPQQPS+IDIQLETGEYFL++KKKSAKKWQ+KQEKQAEKTA
Subjt:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA

Query:  ENKRKREAAFVPPKEPPK-QDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT
        ENKRKREAAFVPPKE PK QDT+ DGD NDIA MAKALKEKAKA GKRKAAETIN E+YIASSS+QP FKK+SKT
Subjt:  ENKRKREAAFVPPKEPPK-QDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT

A0A6J1D441 KRR1 small subunit processome component9.9e-18491.76Show/hide
Query:  YADVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTR
        Y DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYR K  ++AWPIVKSALKEF VACELNLVEGSMTVSTTRKTR
Subjt:  YADVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTR

Query:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED
        DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED
Subjt:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED

Query:  CMLNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEK
        CMLNKMHP     ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEK
Subjt:  CMLNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEK

Query:  TAENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT
        TAENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT
Subjt:  TAENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT

A0A6J1GLG6 KRR1 small subunit processome component2.4e-16984.99Show/hide
Query:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP
        ++EQQQ K KHKGKHDKPKPWDEDPNIDRWKV+KFD SWNEGGMLEVSSFSTLFP YR K  + AWP+VKSALKEFG+AC+LNLVEGSMTVSTTRKT+DP
Subjt:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP

Query:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM
        YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLV K                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE+CM
Subjt:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM

Query:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
        +NKMHP     ILMMKKELANDPALANENWDRFLPKFK+KTVKQKK KSK+KKPYTPFPPPQ PS+IDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
Subjt:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA

Query:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK
        ENKRKREAAFVPPKEPPKQDT  DGDNNDIATMAKALKEKAKALGKRKAAE+IN E+YIASSS+Q HFKK+SK
Subjt:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK

A0A6J1HWB5 KRR1 small subunit processome component1.2e-16884.72Show/hide
Query:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP
        ++EQQQ K KHKGKHDKPKPWDEDPNIDRWKV+KFDPSWNEGGMLEVSSFSTLFP YR K  + AWP+VKSALKEFG+ACELNLVEGSMTVSTTRKT+DP
Subjt:  DVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDP

Query:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM
        YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLV K                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE+CM
Subjt:  YIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM

Query:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
        +NKMHP     ILMMKKELANDPALA+ENWDRFLPKFK+KTVKQKK KSK+KKPYTPFPPPQ PS+IDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA
Subjt:  LNKMHP-----ILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTA

Query:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK
        ENKRKREA+FVPPKE PKQDTK DGDNNDIATMAKALKEKAKALGKRKAAE+IN E+YIA SS+Q HFKK+SK
Subjt:  ENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSK

SwissProt top hitse value%identityAlignment
B3LU25 KRR1 small subunit processome component6.4e-7955.23Show/hide
Query:  HDKPKPWDEDPNIDRWKVDKFDPSWNEGG--MLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKL
        H++ KPWD D +ID+WK+++F    N  G    E SSF TLFP+YR    +  W  V  AL +  +AC L+LVEGSMTV TTRKT DP II+KARDLIKL
Subjt:  HDKPKPWDEDPNIDRWKVDKFDPSWNEGG--MLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKL

Query:  LSRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----
        L+RSVP PQA+KIL D+M CD+IKIGN              LVG      KALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDCM N +HPI     
Subjt:  LSRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----

Query:  LMMKKELANDPALANENWDRFLPKFKRKTV---KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAA
        LM+K+ELA  P LANE+W RFLP FK++ V   K KK ++ EKK YTPFPP Q P K+D+++E+GEYFLS ++K  KK  E++EKQ E+  E + +R   
Subjt:  LMMKKELANDPALANENWDRFLPKFKRKTV---KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAA

Query:  FVPPKE
        F+ P+E
Subjt:  FVPPKE

B5VEQ2 KRR1 small subunit processome component6.4e-7955.23Show/hide
Query:  HDKPKPWDEDPNIDRWKVDKFDPSWNEGG--MLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKL
        H++ KPWD D +ID+WK+++F    N  G    E SSF TLFP+YR    +  W  V  AL +  +AC L+LVEGSMTV TTRKT DP II+KARDLIKL
Subjt:  HDKPKPWDEDPNIDRWKVDKFDPSWNEGG--MLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKL

Query:  LSRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----
        L+RSVP PQA+KIL D+M CD+IKIGN              LVG      KALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDCM N +HPI     
Subjt:  LSRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----

Query:  LMMKKELANDPALANENWDRFLPKFKRKTV---KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAA
        LM+K+ELA  P LANE+W RFLP FK++ V   K KK ++ EKK YTPFPP Q P K+D+++E+GEYFLS ++K  KK  E++EKQ E+  E + +R   
Subjt:  LMMKKELANDPALANENWDRFLPKFKRKTV---KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAA

Query:  FVPPKE
        F+ P+E
Subjt:  FVPPKE

C8Z430 KRR1 small subunit processome component6.4e-7955.23Show/hide
Query:  HDKPKPWDEDPNIDRWKVDKFDPSWNEGG--MLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKL
        H++ KPWD D +ID+WK+++F    N  G    E SSF TLFP+YR    +  W  V  AL +  +AC L+LVEGSMTV TTRKT DP II+KARDLIKL
Subjt:  HDKPKPWDEDPNIDRWKVDKFDPSWNEGG--MLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKL

Query:  LSRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----
        L+RSVP PQA+KIL D+M CD+IKIGN              LVG      KALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDCM N +HPI     
Subjt:  LSRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----

Query:  LMMKKELANDPALANENWDRFLPKFKRKTV---KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAA
        LM+K+ELA  P LANE+W RFLP FK++ V   K KK ++ EKK YTPFPP Q P K+D+++E+GEYFLS ++K  KK  E++EKQ E+  E + +R   
Subjt:  LMMKKELANDPALANENWDRFLPKFKRKTV---KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAA

Query:  FVPPKE
        F+ P+E
Subjt:  FVPPKE

O74777 KRR1 small subunit processome component homolog3.3e-8356.03Show/hide
Query:  KHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLL
        ++ + KPWD D +ID WK++ F    ++   LE SSF+TLFP+YR K  R+ WP V  AL +FG+ C L+LVEGSMTV TTRKT DPY I+ ARDLIKLL
Subjt:  KHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLL

Query:  SRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----L
        +RSVP PQA+KI+ D + CDIIKIGN              L+G      KALE+LT CYILVQG TVA MG +KGLK+VRRIVEDCM N +HPI     L
Subjt:  SRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----L

Query:  MMKKELANDPALANENWDRFLPKFKRKTV-KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAAFVP
        M+K+ELA DP LANE+WDRFLP+FK++ V ++K AK +E K YTPFPP Q PSK+D+++E+GEYFL  ++K  KK  EK+E+Q EK  E +++R  AF+P
Subjt:  MMKKELANDPALANENWDRFLPKFKRKTV-KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAAFVP

Query:  PKEPPKQ
        P+E  K+
Subjt:  PKEPPKQ

P25586 KRR1 small subunit processome component6.4e-7955.23Show/hide
Query:  HDKPKPWDEDPNIDRWKVDKFDPSWNEGG--MLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKL
        H++ KPWD D +ID+WK+++F    N  G    E SSF TLFP+YR    +  W  V  AL +  +AC L+LVEGSMTV TTRKT DP II+KARDLIKL
Subjt:  HDKPKPWDEDPNIDRWKVDKFDPSWNEGG--MLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKL

Query:  LSRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----
        L+RSVP PQA+KIL D+M CD+IKIGN              LVG      KALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDCM N +HPI     
Subjt:  LSRSVPAPQAIKILDDEMQCDIIKIGN--------------LVGK-----KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI-----

Query:  LMMKKELANDPALANENWDRFLPKFKRKTV---KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAA
        LM+K+ELA  P LANE+W RFLP FK++ V   K KK ++ EKK YTPFPP Q P K+D+++E+GEYFLS ++K  KK  E++EKQ E+  E + +R   
Subjt:  LMMKKELANDPALANENWDRFLPKFKRKTV---KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAA

Query:  FVPPKE
        F+ P+E
Subjt:  FVPPKE

Arabidopsis top hitse value%identityAlignment
AT5G08420.1 RNA-binding KH domain-containing protein1.3e-13268.19Show/hide
Query:  KKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAR
        ++K KGKH+KPKPWD+DPNIDRW ++KFDP+WN  GM E S+FSTLFP+YR K  ++ WP V+SALKE+GVAC+LNLVEGSMTVSTTRKTRDPYIIVKAR
Subjt:  KKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAR

Query:  DLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI
        DLIKLLSRSVPAPQAIKIL+DE+QCDIIKIGNLV                     KALEILT CYILVQG+TVAAMG FKGLKQ+RRIVEDC+ N MHP+
Subjt:  DLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPI

Query:  -----LMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKRE
             LMMKKEL  DPALANE+WDRFLP F++K VKQKK KSKEKKPYTPFPPPQ PSKID+QLE+GEYF+SDKKKS KKWQEKQEKQ+EK+ ENKRKR+
Subjt:  -----LMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKRE

Query:  AAFVPPKEPPKQDT---KSDGDNNDIATMAKALKEKAKALGK-RKAAETINAESYIAS-SSNQPHFKKKSK
        A+F+PP+EP   ++   KS+   NDI  +  +LK K K L K +K  E +NAE YIA  SS+     KKSK
Subjt:  AAFVPPKEPPKQDT---KSDGDNNDIATMAKALKEKAKALGK-RKAAETINAESYIAS-SSNQPHFKKKSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACGCGGATGTTGAGCAACAGCAAGGGAAAAAGAAGCATAAGGGCAAGCACGACAAGCCGAAGCCATGGGATGAAGATCCTAATATTGACCGCTGGAAAGTCGACAAGTT
TGATCCCTCCTGGAATGAAGGCGGCATGCTCGAAGTCAGCTCCTTCTCTACTCTGTTTCCCGAGTACAGAGGCAAGGAATTTCGACAAGCATGGCCGATTGTTAAGTCTG
CGTTGAAAGAGTTTGGTGTTGCCTGTGAGCTGAATCTGGTTGAAGGATCAATGACGGTTTCAACAACCAGGAAGACTAGGGATCCATATATTATTGTCAAGGCAAGGGAT
CTTATCAAACTCTTGTCAAGAAGCGTACCTGCTCCTCAGGCAATTAAAATACTGGACGATGAAATGCAATGTGATATCATTAAGATTGGGAATTTGGTAGGCAAGAAGGC
GCTTGAAATATTGACAGGATGCTATATTCTTGTTCAGGGCAATACAGTTGCTGCAATGGGTTCATTCAAAGGTTTAAAGCAAGTCAGGAGGATAGTGGAAGACTGTATGC
TGAATAAAATGCATCCTATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTCGCAAATGAAAATTGGGATAGGTTTCTTCCAAAATTCAAGAGGAAAACTGTT
AAACAAAAGAAGGCCAAGAGTAAAGAGAAGAAGCCGTATACACCTTTTCCTCCTCCTCAGCAACCTAGCAAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAG
TGACAAAAAGAAGTCAGCAAAGAAATGGCAGGAGAAGCAGGAGAAGCAGGCAGAAAAAACTGCTGAGAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGC
CTCCGAAGCAGGATACCAAATCTGATGGGGATAACAACGATATAGCCACAATGGCAAAGGCCCTGAAGGAAAAGGCGAAGGCATTAGGGAAACGAAAAGCTGCGGAAACT
ATCAATGCGGAATCTTATATTGCCTCATCTAGCAATCAGCCGCATTTCAAAAAGAAATCCAAGACT
mRNA sequenceShow/hide mRNA sequence
TACGCGGATGTTGAGCAACAGCAAGGGAAAAAGAAGCATAAGGGCAAGCACGACAAGCCGAAGCCATGGGATGAAGATCCTAATATTGACCGCTGGAAAGTCGACAAGTT
TGATCCCTCCTGGAATGAAGGCGGCATGCTCGAAGTCAGCTCCTTCTCTACTCTGTTTCCCGAGTACAGAGGCAAGGAATTTCGACAAGCATGGCCGATTGTTAAGTCTG
CGTTGAAAGAGTTTGGTGTTGCCTGTGAGCTGAATCTGGTTGAAGGATCAATGACGGTTTCAACAACCAGGAAGACTAGGGATCCATATATTATTGTCAAGGCAAGGGAT
CTTATCAAACTCTTGTCAAGAAGCGTACCTGCTCCTCAGGCAATTAAAATACTGGACGATGAAATGCAATGTGATATCATTAAGATTGGGAATTTGGTAGGCAAGAAGGC
GCTTGAAATATTGACAGGATGCTATATTCTTGTTCAGGGCAATACAGTTGCTGCAATGGGTTCATTCAAAGGTTTAAAGCAAGTCAGGAGGATAGTGGAAGACTGTATGC
TGAATAAAATGCATCCTATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTCGCAAATGAAAATTGGGATAGGTTTCTTCCAAAATTCAAGAGGAAAACTGTT
AAACAAAAGAAGGCCAAGAGTAAAGAGAAGAAGCCGTATACACCTTTTCCTCCTCCTCAGCAACCTAGCAAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAG
TGACAAAAAGAAGTCAGCAAAGAAATGGCAGGAGAAGCAGGAGAAGCAGGCAGAAAAAACTGCTGAGAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGC
CTCCGAAGCAGGATACCAAATCTGATGGGGATAACAACGATATAGCCACAATGGCAAAGGCCCTGAAGGAAAAGGCGAAGGCATTAGGGAAACGAAAAGCTGCGGAAACT
ATCAATGCGGAATCTTATATTGCCTCATCTAGCAATCAGCCGCATTTCAAAAAGAAATCCAAGACT
Protein sequenceShow/hide protein sequence
YADVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARD
LIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGKKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPILMMKKELANDPALANENWDRFLPKFKRKTV
KQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAET
INAESYIASSSNQPHFKKKSKT