; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006455 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006455
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCT domain-containing protein
Genome locationscaffold761:3487..5013
RNA-Seq ExpressionMS006455
SyntenyMS006455
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR010402 - CCT domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154897.1 zinc finger protein CONSTANS-LIKE 6 isoform X1 [Momordica charantia]5.2e-7078.72Show/hide
Query:  MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG---------------------------------------VSDDGDGRKKEE
        MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG                                       VSDDGDGRKKEE
Subjt:  MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG---------------------------------------VSDDGDGRKKEE

Query:  EEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
        EEISLKLNLNYEEVLEAWSGRGSLWAAADDS LSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
Subjt:  EEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

XP_022154898.1 uncharacterized protein LOC111022043 isoform X2 [Momordica charantia]1.6e-6376.84Show/hide
Query:  MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG---------------------------------------VSDDGDGRKKEE
        MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG                                       VSDDGDGRKKEE
Subjt:  MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG---------------------------------------VSDDGDGRKKEE

Query:  EEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVR
        EEISLKLNLNYEEVLEAWSGRGSLWAAADDS LSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQ R
Subjt:  EEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVR

XP_038893944.1 zinc finger protein CONSTANS-LIKE 16 isoform X1 [Benincasa hispida]4.4e-3760Show/hide
Query:  MGYSWFLKSP-KEEEQEVPNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGVSDDGDGRKKE-EEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLS
        MG+SW +KSP KE+EQ+VPN   + DF+AF E   ++ PP PP  + ++  +      DG   E + +ISL LNLNYEEVLEAWS RGSLWAAA  S   
Subjt:  MGYSWFLKSP-KEEEQEVPNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGVSDDGDGRKKE-EEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLS

Query:  NLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIKVNNITN
        + T+  YMGEVPR+EEER RRVLRYKEKRH RLFS KIRYQVRKLNAEKR RIK   +T+
Subjt:  NLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIKVNNITN

XP_038893945.1 zinc finger protein CONSTANS-LIKE 7 isoform X2 [Benincasa hispida]3.4e-3760.49Show/hide
Query:  MGYSWFLKSP-KEEEQEVPNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGVSDDGDGRKKE-EEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLS
        MG+SW +KSP KE+EQ+VPN   + DF+AF E   ++ PP PP  + ++  +      DG   E + +ISL LNLNYEEVLEAWS RGSLWAAA  S   
Subjt:  MGYSWFLKSP-KEEEQEVPNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGVSDDGDGRKKE-EEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLS

Query:  NLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIKVNNITNFF
        + T+  YMGEVPR+EEER RRVLRYKEKRH RLFS KIRYQVRKLNAEKR RIK     NFF
Subjt:  NLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIKVNNITNFF

XP_038893946.1 zinc finger protein CONSTANS-LIKE 7 isoform X3 [Benincasa hispida]5.8e-3761.69Show/hide
Query:  MGYSWFLKSP-KEEEQEVPNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGVSDDGDGRKKE-EEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLS
        MG+SW +KSP KE+EQ+VPN   + DF+AF E   ++ PP PP  + ++  +      DG   E + +ISL LNLNYEEVLEAWS RGSLWAAA  S   
Subjt:  MGYSWFLKSP-KEEEQEVPNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGVSDDGDGRKKE-EEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLS

Query:  NLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
        + T+  YMGEVPR+EEER RRVLRYKEKRH RLFS KIRYQVRKLNAEKR RIK
Subjt:  NLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

TrEMBL top hitse value%identityAlignment
A0A0A0LYC0 CCT domain-containing protein8.2e-2952.53Show/hide
Query:  YSWFLKSPKEE---EQEV---PNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGVSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSY
        +SW +KSPK+E   EQ+V   P+   + DF AF +   ++ PPPP    D +  +  +   D  +   +  +L LNLNYEEVLEAWS RGSLWAAA  S+
Subjt:  YSWFLKSPKEE---EQEV---PNGAVKGDFEAFLE---DKLPPPPPEAEDNFLAYGVSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSY

Query:  LSNLTNAAYMGEVP--RIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
         ++ T+  YMGEVP  R+EEERRRRV RYKEKR  R+F  KIRYQVRKLNA++R RIK
Subjt:  LSNLTNAAYMGEVP--RIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

A0A6J1DLJ5 uncharacterized protein LOC111022043 isoform X27.8e-6476.84Show/hide
Query:  MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG---------------------------------------VSDDGDGRKKEE
        MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG                                       VSDDGDGRKKEE
Subjt:  MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG---------------------------------------VSDDGDGRKKEE

Query:  EEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVR
        EEISLKLNLNYEEVLEAWSGRGSLWAAADDS LSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQ R
Subjt:  EEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVR

A0A6J1DMX8 zinc finger protein CONSTANS-LIKE 6 isoform X12.5e-7078.72Show/hide
Query:  MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG---------------------------------------VSDDGDGRKKEE
        MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG                                       VSDDGDGRKKEE
Subjt:  MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYG---------------------------------------VSDDGDGRKKEE

Query:  EEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
        EEISLKLNLNYEEVLEAWSGRGSLWAAADDS LSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
Subjt:  EEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

A0A6J1HJ00 zinc finger protein CONSTANS-LIKE 61.1e-3050.25Show/hide
Query:  MGYSWFLKSPK----EEEQEVPNGAVKGDFEAFL----EDKLPPPPPE-----------------------------AEDNFLAYGV-------------
        MGYS  LKSPK    EEEQEVPN ++  DF+AF     E+KLP    E                             A      YG+             
Subjt:  MGYSWFLKSPK----EEEQEVPNGAVKGDFEAFL----EDKLPPPPPE-----------------------------AEDNFLAYGV-------------

Query:  --SDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARI
          S DGDG  K +++ SL LNLNYEEV EAWSGRGSLWA    S  SN T+  YMGEVPR+EEER RRVLRY+EKR  RLFSNKIRYQVRKLNA+KR RI
Subjt:  --SDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARI

Query:  K
        K
Subjt:  K

A0A6J1I4F9 zinc finger protein CONSTANS-LIKE 61.3e-2949.5Show/hide
Query:  MGYSWFLKSPK---EEEQEVPNGAVKGDFEAFL----EDKLPPPP---------------------------PEAEDNFLAYG-----------------
        MGYS  LK  K   EEEQEVPN +++ DF+AF     E+KLP                               E + N   +G                 
Subjt:  MGYSWFLKSPK---EEEQEVPNGAVKGDFEAFL----EDKLPPPP---------------------------PEAEDNFLAYG-----------------

Query:  VSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
         S DGDG  K +++ SL LNLNYEEV EAWSGRGSLWAA   S  SN T+  YMGEVPR+EEER RRVLRY+EKR  RLFSNKIRYQVRKLNA+KR RIK
Subjt:  VSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

SwissProt top hitse value%identityAlignment
Q8LG76 Zinc finger protein CONSTANS-LIKE 63.3e-1139.26Show/hide
Query:  EAED---NFLAYGVSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAY----MGEVPRIEEE------------------RR
        E ED   N +  GV++   G K+E++E +L L L+YE V+  W G+G  W A   S + +L    +    MGE                         R 
Subjt:  EAED---NFLAYGVSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAY----MGEVPRIEEE------------------RR

Query:  RRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
         RV RY+EKR  RLFS KIRY+VRKLNAEKR R+K
Subjt:  RRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

Q8RWD0 Zinc finger protein CONSTANS-LIKE 162.4e-0938.94Show/hide
Query:  KKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADD-------------SYLSNLTNAAYM-----GEVPRI---EEERRRRVLRYKEKRHNRLFSNKIRYQ
        K+EE +  L L LNY+ V+  W G+G  W++ +              S + N   + +      G +P     +  R  RV RY+EKR  RLFS KIRY+
Subjt:  KKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADD-------------SYLSNLTNAAYM-----GEVPRI---EEERRRRVLRYKEKRHNRLFSNKIRYQ

Query:  VRKLNAEKRARIK
        VRKLNAEKR R+K
Subjt:  VRKLNAEKRARIK

Q9C9A9 Zinc finger protein CONSTANS-LIKE 74.1e-0935.75Show/hide
Query:  LKSPKEEEQ-----EVPN--GAVKGD----FEAFLED--KLPPPPPEAEDNFLAYGVSDDGD--GRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAA--
        ++S  EEEQ     + PN  G +K +    FE   +D  ++     E E+     G S D D      ++ + SL L L+Y  V+ AW   GS W     
Subjt:  LKSPKEEEQ-----EVPN--GAVKGD----FEAFLED--KLPPPPPEAEDNFLAYGVSDDGD--GRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAA--

Query:  DDSYLSNLTNAAYM-----------GEVPR--------IEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
         +  L   T   ++           G V R         + ER  RVLRYKEKR  RLFS KIRY+VRKLNAE+R RIK
Subjt:  DDSYLSNLTNAAYM-----------GEVPR--------IEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

Q9LU68 Protein CHLOROPLAST IMPORT APPARATUS 22.0e-0845.45Show/hide
Query:  KEEEEISLK-----LNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNA-AYMGEVPRIEEE--RRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
        ++ EE SLK     L L+Y+ VLEAWS + S +   D+   S   +  A + ++    +   R   VLRYKEKR  RLFS KIRYQVRKLNA++R R+K
Subjt:  KEEEEISLK-----LNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNA-AYMGEVPRIEEE--RRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

Q9M9B3 Zinc finger protein CONSTANS-LIKE 82.0e-0842.53Show/hide
Query:  EISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
        E + +  LNYE V+ AW  + S     +++    L       E  R+  ER  RV RY++KR NRLF  KIRY+VRK+NA+KR R+K
Subjt:  EISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

Arabidopsis top hitse value%identityAlignment
AT1G07050.1 CCT motif family protein9.9e-1956.84Show/hide
Query:  EEEEISLKLNLNYEEVLEAWSG-RGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRR----VLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
        E++++ LKLNLN++EV++AWS  +  LW        S L N+ Y GEVP IEE+R  R    VLRYKEKR +RLFS KIRYQVRKLNA+KR R K
Subjt:  EEEEISLKLNLNYEEVLEAWSG-RGSLWAAADDSYLSNLTNAAYMGEVPRIEEERRRR----VLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

AT1G68520.1 B-box type zinc finger protein with CCT domain2.4e-1239.26Show/hide
Query:  EAED---NFLAYGVSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAY----MGEVPRIEEE------------------RR
        E ED   N +  GV++   G K+E++E +L L L+YE V+  W G+G  W A   S + +L    +    MGE                         R 
Subjt:  EAED---NFLAYGVSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAY----MGEVPRIEEE------------------RR

Query:  RRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK
         RV RY+EKR  RLFS KIRY+VRKLNAEKR R+K
Subjt:  RRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIK

AT4G25990.1 CCT motif family protein4.8e-1347.12Show/hide
Query:  SDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAY---MGEVPRIEEE--RRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKR
        S+  D   K E+ +S  L L+Y+ VLEAWSG+ S +  +D+   S+     +   +GE+    E   R   VLRYKEKR NRLFS KIRYQVRKLNA++R
Subjt:  SDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAY---MGEVPRIEEE--RRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKR

Query:  ARIK
         R+K
Subjt:  ARIK

AT4G25990.2 CCT motif family protein1.6e-1346.73Show/hide
Query:  SDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAY---MGEVPRIEEE--RRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKR
        S+  D   K E+ +S  L L+Y+ VLEAWSG+ S +  +D+   S+     +   +GE+    E   R   VLRYKEKR NRLFS KIRYQVRKLNA++R
Subjt:  SDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAY---MGEVPRIEEE--RRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKR

Query:  ARIKVNN
         R+KV +
Subjt:  ARIKVNN

AT5G14370.1 CCT motif family protein2.1e-1342.98Show/hide
Query:  GVSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLW-------------AAADDSYLSNLTNAAYMGEVPRIEE-------ERRRRVLRYKEKRHNRL
        G  D  DGR       SL L L+YE+++EAWS +G+L+             A+AD    ++   A  +  VP +E         R   +LRYKEKR NRL
Subjt:  GVSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLW-------------AAADDSYLSNLTNAAYMGEVPRIEE-------ERRRRVLRYKEKRHNRL

Query:  FSNKIRYQVRKLNAEKRARIK
        FS +IRYQVRKLNAEKR R+K
Subjt:  FSNKIRYQVRKLNAEKRARIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTACAGTTGGTTCCTGAAGAGCCCAAAGGAAGAAGAACAAGAAGTTCCAAACGGCGCCGTAAAAGGGGATTTCGAAGCCTTTCTGGAGGACAAGCTGCCGCCGCC
GCCACCGGAGGCGGAGGATAACTTCTTGGCCTACGGCGTCTCCGACGACGGCGATGGCAGGAAGAAGGAGGAGGAGGAGATTTCGCTGAAGTTAAATCTAAACTATGAAG
AGGTTTTGGAGGCATGGTCCGGCCGTGGGTCTCTGTGGGCCGCCGCCGACGACTCTTATCTTTCAAACTTAACCAATGCCGCTTATATGGGAGAGGTTCCAAGAATAGAA
GAAGAACGAAGAAGAAGAGTATTGAGATACAAAGAGAAGCGCCACAACAGATTGTTCTCAAACAAGATAAGATACCAAGTTCGTAAGCTCAATGCAGAAAAAAGGGCAAG
AATAAAGGTCAACAATATCACCAACTTCTTT
mRNA sequenceShow/hide mRNA sequence
ATGGGTTACAGTTGGTTCCTGAAGAGCCCAAAGGAAGAAGAACAAGAAGTTCCAAACGGCGCCGTAAAAGGGGATTTCGAAGCCTTTCTGGAGGACAAGCTGCCGCCGCC
GCCACCGGAGGCGGAGGATAACTTCTTGGCCTACGGCGTCTCCGACGACGGCGATGGCAGGAAGAAGGAGGAGGAGGAGATTTCGCTGAAGTTAAATCTAAACTATGAAG
AGGTTTTGGAGGCATGGTCCGGCCGTGGGTCTCTGTGGGCCGCCGCCGACGACTCTTATCTTTCAAACTTAACCAATGCCGCTTATATGGGAGAGGTTCCAAGAATAGAA
GAAGAACGAAGAAGAAGAGTATTGAGATACAAAGAGAAGCGCCACAACAGATTGTTCTCAAACAAGATAAGATACCAAGTTCGTAAGCTCAATGCAGAAAAAAGGGCAAG
AATAAAGGTCAACAATATCACCAACTTCTTT
Protein sequenceShow/hide protein sequence
MGYSWFLKSPKEEEQEVPNGAVKGDFEAFLEDKLPPPPPEAEDNFLAYGVSDDGDGRKKEEEEISLKLNLNYEEVLEAWSGRGSLWAAADDSYLSNLTNAAYMGEVPRIE
EERRRRVLRYKEKRHNRLFSNKIRYQVRKLNAEKRARIKVNNITNFF